Gene detail

Detail information of GWHGAAZE027760

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADJ67442.1	2.24202E-61	ethylene response factor 13 [Actinidia deliciosa]
Swissprot	tr\|Q8VZ91\|EF103_ARATH	4E-49	Ethylene-responsive transcription factor 6
trEMBL	tr\|D8VD40\|D8VD40_ACTDE	8E-62	Ethylene response factor 13 {ECO:0000313\|EMBL:ADJ67442.1}
TAIR10	AT4G17490.1	5E-34	ethylene responsive element binding factor 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	27368560	27369498	-
GWHAAZE00000008	mRNA	27368560	27369498	-
GWHAAZE00000008	exon	27369175	27369498	-
GWHAAZE00000008	exon	27368560	27369144	-
GWHAAZE00000008	CDS	27369175	27369498	-
GWHAAZE00000008	CDS	27368560	27369144	-

Transcript Sequence
>GWHTAAZE027794 ATGGCAACACAAGACGAAGTCTCCGCCATTGAACTGATCAAGCAACACCTTTTCGCTGAATTCTCACCTACTGCTGCGTGCTTAATTGCTGAACTAAACAATTGTACCTCGAGCTTCCAAGATAGTACCACAAGCATAAAATCCGAGGTTCCAAGCTCTCAATCTGATTCAATAAAAACTAGTGAAAGCAATTTGTTCGATTTTACATTCCAACAGAAACCTCAAGTAATTGATCTTACAACACCGAAACCGATGAATTCGACTTCTCAATGGAATCGGAAGCCGTCACTCAAGGTAGAGTTACCTCGGGCGAAGAAACCGGAGGTTGAAACGGCGCCGTGTTCGGAGGAAAACAGGCACTACCGAGGGGTCAGGCGCCGGCCGTGGGGGAAGTTTGCAGCGGAGATCCGAGATCCGGCACGGCGAGGGTCTAGGGTTTGGCTCGGGACATTCGAGACCGCCATTGATGCCGCCAAGGCTTACGATTCCGCCGCTTACAAAATGCGAGGAAGCAAAGCGATTCTCAACTTCCCCCTCGAAATTTGTAGCGGCGTCACCGCCGTGGACTGTGGCCGGAAAATGTGCGGAGAGGGGGCGGAGGAAACTGAGCTGAATGTGGTGAAGAAGGAGAGGCTACCGGAATATAATCTCAAAGTCGGTGATGGCGGCGCCGCCGTGGACGATGGCCGGAAAAGGTCCAGAATGGTAGCGGAAGAAAGTGAGGAGAAGGTGGTGAAGAAGGAAAGGATAACGGAATGTAACATGTTGACGGCGATGGTAACTCCGTTAACGCCGTTGAGTTTGATGTCCGGTTGGGATAAGAATTTTAACGACTTATTTAACGGAGTTCTGTTGTCGCCGTTATCTCCCTACCCAGCGATGGGATGTTCTCAGCTTAGTGTCATGTAA

Network for GWHGAAZE027760

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0150

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	120	170	1.70E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	125.036
	SRR3591706	second leaf	60.292
	SRR3591707	mature leaf	17.900
	SRR3591708	Shoot apex	151.364
	SRR3591709	Stem	127.632
	SRR3591710	White floral bud	48.222
	SRR3591711	White flower	59.004
	SRR3591712	Green floral bud	27.682
	SRR3591713	Yellow flower	4.221
SRP173429	SRR8316895	Juvenile bud stage	74.473
	SRR8316896	Juvenile bud stage	21.652
	SRR8316897	Juvenile bud stage	29.133
	SRR8316894	Third green stage	36.876
	SRR8316900	Third green stage	41.996
	SRR8316901	Third green stage	52.589
	SRR8316898	Complete white stage	0.663
	SRR8316899	Complete white stage	83.724
	SRR8316903	Complete white stage	2.718
	SRR8316902	Silver flowering stage	1.058
	SRR8316904	Silver flowering stage	1.060
	SRR8316905	Silver flowering stage	1.675
	SRR8316906	Gold flowering stage	9.885
	SRR8316907	Gold flowering stage	7.916
	SRR8316908	Gold flowering stage	5.170
SRP132670	SRR6706286	Control	13.163
	SRR6706287	Light intensity 50%	12.389
	SRR6706288	Light intensity 20%	8.440
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.942
	CNS0095593	Slightly white alabastrum(diploid) 2	54.807
	CNS0095594	Slightly white alabastrum(diploid) 3	49.192
	CNS0095595	Whole white alabastrum(diploid) 2	13.553
	CNS0095596	Whole white alabastrum(diploid) 3	7.101
	CNS0095597	Whole white alabastrum(diploid) 4	16.532
	CNS0095598	Silvery flower (diploied) 1	117.877
	CNS0095599	Silvery flower (diploied) 2	83.071
	CNS0095600	Silvery flower (diploied) 3	36.025
	CNS0095601	Golden flower (diploid) 1	157.075
	CNS0095602	Golden flower (diploid) 2	41.304
	CNS0095603	Golden flower (diploid) 3	42.460
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.295
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.805
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.249
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.749
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.636
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.850
	CNS0095610	Silvery flower (tetraploid) 1	5.709
	CNS0095611	Silvery flower (tetraploid) 2	3.300
	CNS0095612	Silvery flower (tetraploid) 3	13.134
	CNS0095613	Golden flower (tetraploid) 1	1.440
	CNS0095614	Golden flower (tetraploid) 2	2.331
	CNS0095615	Golden flower (tetraploid) 3	0.519
CRA001975	CRR073297	Stem 1	60.911
	CRR073298	Stem 2	92.634
	CRR073299	Stem 3	134.158
	CRR073300	Leaf 1	146.380
	CRR073301	Leaf 2	185.963
	CRR073302	Leaf 3	180.228
	CRR073303	Juvenile bud 1	137.407
	CRR073304	Juvenile bud 2	80.584
	CRR073305	Juvenile bud 3	206.307
	CRR073306	Third green 1	7.405
	CRR073307	Third green 2	6.736
	CRR073308	Third green 3	10.383
	CRR073309	Second white 1	0.800
	CRR073310	Second white 2	1.018
	CRR073311	Second white 3	1.231
	CRR073312	Silver flowering 1	0.725
	CRR073313	Silver flowering 2	1.102
	CRR073314	Silver flowering 3	1.570
	CRR073315	Gold flowering 1	55.183
	CRR073316	Gold flowering 2	37.653
	CRR073317	Gold flowering 3	96.638
	CRR073318	Tawny withering 1	44.384
	CRR073319	Tawny withering 2	37.883
	CRR073320	Tawny withering 3	82.806