Gene detail

Detail information of GWHGAAZE027774

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004241982.1	0	PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Solanum lycopersicum]
COG	YP_001536464.1	3E-18	SRA-YDG domain-containing protein
Swissprot	tr\|O82175\|SUVH5_ARATH	0	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5
trEMBL	tr\|K4C6S6\|K4C6S6_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g060960.1.1}
TAIR10	AT2G35160.1	1E-179	SU(VAR)3-9 homolog 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	27614629	27618222	+
GWHAAZE00000008	mRNA	27614629	27618222	+
GWHAAZE00000008	exon	27614629	27614708	+
GWHAAZE00000008	exon	27615630	27618222	+
GWHAAZE00000008	CDS	27614629	27614708	+
GWHAAZE00000008	CDS	27615630	27618222	+

Transcript Sequence
>GWHTAAZE027808 ATTGTGTTCAGCTTTGAAATTACGAAGTTTCCACTGAGCTCTGTTGAGTACTTAGCTCAAGAAGCTCCGTTACAGAGCAGTTTGTTGAAAATGGAAATATATTCGAATGGTGCATTGTCGGATAAGAACTTGAAGAAGCGGTCATTTGAGAACGGGAACTGCTCACCGGCTTCTGGTGTGCCAGTAGAATATAAGCGCAGGAAAGTCTCGGCAGTTCGGAGTTATCCACCTGGATGTGGGCGGACCGCCTTACGAATCACTTTGAGTTATCATGAAACCAGACTGTCACGGGCAGAGAATTGTGTAGAGGAGTGGAATGACTTGGAGGTGAAGGCTACGGTGAAGGGGGAGTTCCATGAGTGGAATCAGGGTTTGGTGAAGGAGGAGTTGAGTGAGGGGGAAGTTAAGGGTTTGGTGAAGGAGGAGGTTACTAATGGTGAAGTTAAGGGTTTGGTGAAGAAGGAGAAGAATGATGGTGAAATTGAGTCTTGGGTGAAAGAGGAGTCAAATGAGGAGAAATTGAGTCTTCAGGGTTTGATGAAGGAAGCGTCACATGAGGAGGAAGTTCAAGTTCAGGCCACGGAGCAAACTGTAGGTGCAGTGGAAAACAAAACTCCATATATTAATGATGCAAATATTTTGGAGCAGACTGGTTCGAAGAGTGGACATCCATTAAGAAGAGTTTTGGCAACACGAAACTTCCCTCTATTTTGTGGAAGGAATGCTCCTCGACCCACTGAGGAAGATCGCTGGAGGATTAATGGACACAAGCAGGTGGTTTCAATGGCAAAGGTTGGTGTGGGAAGTGGAGTATTGAGAGAGACATTTGGGGCTGGACCTGCAGAATCGAAAGTGAATGCTGGAGATGGTTATGGGCATAAAAGTAAATTGAAATCGATTGTCTTTGAACCAAGGAAGAGGCTCCAAATAAAAATTAAAAGGAATAACAAGAATGTCACCAGTCCAGCAAGAAACTCAATGAAGGAAAAGTTAAATTCTGCCTGTAATGTGGGTTTGAAGGATGACTATGAAGAGAACAAAGAAGACTTTCCTCTTGGTCAGGACCCATGTGATTTTGATGTGAGATTGCCACCTTTTGGTCCCAAAAATTCAAATCATGGTGACGCCCGCAACAAAGTAAGAGAATCTCTTCGATTATTTCATGCAATTTGCAGAAAGCTATTGCAAGGGGAAGAAGCAAAGTCGAGGCAAGGAGAAATAGGAAGGACTCGGAAGAACGGTAAAGATAAAGATACTAGAAGGATCGATCTTTTAGCTGCAAAAATTGTGAAGCAAAAAGGGAAGGAGGTTAACACGGGTGAACAAATAGTAGGTTCGGTTCCTGGAGTTGAAGTAGGTGATGAGTATCTATACAGGGTGGAGCTCGCTATCATTGCTGTTCATCGCCTCTACCAAGGCGGTATAGATTACAAAAAAGTAGGCAAACAAATTGTTGCTGTTAGTATTGTTGCTTCAGGTGGTTATGATGATGAACTCGATAACAATGGCATTTTAGTATACTCTGGTCAAGGAGGGAATTTAGTGGGCAGGAATAAGCAACCCGAAGACCAGAAGCTCGAAAGAGGAAATTTGGCTTTAAAGAATAGTATATCGGCACAGAATCCCGTAAGGGTAATCCGAGGATCTAAAGAGACAAAGGCCGCTGATTCTTCAGATGCAAGGGCTAAGGTTGTAATGACATATGTATATGATGGACTATATTTGGTGGAGAAGTATTGGCAAGATATTGGTCCACATGGGAAGCTAGTATATAAGTTTGAATTGAGGAGAATTCCCGGTCAGCGCGAGCTTGCTTGGAAAGAAGTGAAGAAGTCTAACAAATTCAAAACCAGAGTGGGTCTTTGTGTAGTTGATATTTCGGGTGGCAAAGAGTTATTTCCCATTTGTGCTGTGAACACCATAGACAAGCAAACACCCCCGCCATTCAAATACATTACTAAAATGATTTATCCTAATAGGTATTTCCCTACTCCTCCAAAAGGGTGTGATTGTATTGGCGGCTGTGTTGACTCTAGGAGATGCTTGTGTGCAGCCAAGAACGGAGGCAATTTTCCATATAACTATAATGGAGCTATAGTTGAAACCAAGGCACTCGTGTATGAATGTGGCCCATCTTGCAAGTGCCCTCCTTCGTGTTACAATCGAGTCAGCCAACATGGTACAAAAATTCAGCTTGAAATCTTTAAAACGGAGTTGAGGGGCTGGGGAGTGAGATCATTGAATTCTATTCCTTCAGGGAGTTTTATATGCGAGTATACGGGCGAACTTCTTGAAGACATGGAGGCTGAACAAAGAACTAACGATGAGTATCTGTTCGATATTGGGCAGAATTATAACGATTGTTCTGTAAAACCCGATATTGAACCAATGGATTATGGTGCATTTACTATTGATGCAGTGAAGTGTGGAAATGTTGGAAGGTTTATTAACCACAGTTGTTCTCCAAACCTCTATGCTCAAAATGTGCTTTATGATCACGAAGACAAGAGAATGCCCCACATAATGCTCTTTGCTGCAGAAAATATTCCGCCGTTGGTGGAGCTGAATTATCACTACCATTATTCGGTGGATCAAATTTATGATTCTGATGGGAATATCAAGGTGAAGAGATGCTATTGTGGTTCTAATGCATGTAGCGGAAGGATGTATTAG

Network for GWHGAAZE027774

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02182.18	SAD_SRA	444	601	9.40E-48
PF05033.17	Pre-SET	627	722	1.40E-19
PF00856.29	SET	741	859	3.60E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016571	biological_process	histone methylation
GO:0034968	biological_process	histone lysine methylation
GO:0005634	cellular_component	nucleus
GO:0005515	molecular_function	protein binding
GO:0008270	molecular_function	zinc ion binding
GO:0018024	molecular_function	histone-lysine N-methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.747
	SRR3591706	second leaf	0.561
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	4.255
	SRR3591709	Stem	0.623
	SRR3591710	White floral bud	1.287
	SRR3591711	White flower	1.003
	SRR3591712	Green floral bud	0.936
	SRR3591713	Yellow flower	0.059
SRP173429	SRR8316895	Juvenile bud stage	1.418
	SRR8316896	Juvenile bud stage	1.381
	SRR8316897	Juvenile bud stage	0.890
	SRR8316894	Third green stage	0.741
	SRR8316900	Third green stage	1.212
	SRR8316901	Third green stage	0.768
	SRR8316898	Complete white stage	0.018
	SRR8316899	Complete white stage	0.585
	SRR8316903	Complete white stage	0.306
	SRR8316902	Silver flowering stage	0.001
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.016
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.037
SRP132670	SRR6706286	Control	1.161
	SRR6706287	Light intensity 50%	1.447
	SRR6706288	Light intensity 20%	1.960
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.117
	CNS0095593	Slightly white alabastrum(diploid) 2	1.239
	CNS0095594	Slightly white alabastrum(diploid) 3	1.129
	CNS0095595	Whole white alabastrum(diploid) 2	0.702
	CNS0095596	Whole white alabastrum(diploid) 3	0.923
	CNS0095597	Whole white alabastrum(diploid) 4	0.485
	CNS0095598	Silvery flower (diploied) 1	1.794
	CNS0095599	Silvery flower (diploied) 2	0.826
	CNS0095600	Silvery flower (diploied) 3	0.610
	CNS0095601	Golden flower (diploid) 1	1.715
	CNS0095602	Golden flower (diploid) 2	1.604
	CNS0095603	Golden flower (diploid) 3	1.379
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.796
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.555
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.418
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.642
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.081
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.841
	CNS0095610	Silvery flower (tetraploid) 1	0.156
	CNS0095611	Silvery flower (tetraploid) 2	0.741
	CNS0095612	Silvery flower (tetraploid) 3	0.338
	CNS0095613	Golden flower (tetraploid) 1	0.019
	CNS0095614	Golden flower (tetraploid) 2	0.020
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.164
	CRR073298	Stem 2	4.294
	CRR073299	Stem 3	2.660
	CRR073300	Leaf 1	2.560
	CRR073301	Leaf 2	2.076
	CRR073302	Leaf 3	1.302
	CRR073303	Juvenile bud 1	0.413
	CRR073304	Juvenile bud 2	0.284
	CRR073305	Juvenile bud 3	0.760
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.029
	CRR073308	Third green 3	0.001
	CRR073309	Second white 1	0.074
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.036
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.870
	CRR073316	Gold flowering 2	0.777
	CRR073317	Gold flowering 3	0.079
	CRR073318	Tawny withering 1	0.417
	CRR073319	Tawny withering 2	0.541
	CRR073320	Tawny withering 3	0.467