Gene detail

Detail information of GWHGAAZE027787

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007039636.1	1.96607E-65	Receptor protein kinase isoform 2 [Theobroma cacao]
COG	YP_005028720.1	0.000003	putative signal transduction protein
Swissprot	tr\|Q9LTC0\|Y5707_ARATH	3E-34	Probable receptor-like protein kinase At5g47070
trEMBL	tr\|A0A061G4P1\|A0A061G4P1_THECC	7E-66	Receptor protein kinase isoform 2 {ECO:0000313\|EMBL:EOY24137.1}
TAIR10	AT5G47070.1	3E-30	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	27912365	27915896	-
GWHAAZE00000008	mRNA	27912365	27915896	-
GWHAAZE00000008	exon	27915553	27915896	-
GWHAAZE00000008	exon	27915448	27915484	-
GWHAAZE00000008	exon	27912365	27912679	-
GWHAAZE00000008	CDS	27915553	27915896	-
GWHAAZE00000008	CDS	27915448	27915484	-
GWHAAZE00000008	CDS	27912365	27912679	-

Transcript Sequence
>GWHTAAZE027821 ATGAAGTGCTTTTACATCTTCAAGGACAAATCCAAGCCAAATCAAGAAAAATCACCACGAAAACCCAAGAATCAAAGCACCCGGTTGGCCACAAATTCTAAAGATTTGGTTCAATCACCAAGAACTGTTATGGAAATGTATAAACAGAGAGAGAAGAATTTGAGAGTTTTCACTTTCTCAGAGCTGAGAAATGCAACCCATGATTTCAACAAGTTGTTGAAGATTGGGGAAGGTGGTTTTGGGAGGGTTTATAAAGGTTCTATTAAGATTGAAAATGGGCAAGGTGGTGGTGTTGATTCTTCTCTTGTGGTTGCCATTAAAAGCTTAACAAGCATGGATTGCAGGCTGTGTTTGATGAATAATGCTATGCTGACAAAAAATCCTATTGGGACATATGGATACGCCGCCCCGGAATACATTGAAACTGGCCATCTCAAAGTAGAGAGTGATATTTGGAGTTTTGGCATCGTGGTCTACGAGATCCTCACGGGCAGGCGGGTATTGGAAAATAACCGCCCCAGGTCAGAGCAGAAGCTTCTAGATTGGGTGAAACAGTTCCCGCATAATGGCAATATGTTTTATATGATAATTGACCCTCGGATCAAGAACCAGTACTCTCTCAGCTCGGCTCGAAAAATTGCCGTTGGCGGATACTTGTTTGAACAAGAACCGAAGGATCGGGCCGAAAATGAGTGA

Network for GWHGAAZE027787

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	121	179	5.50E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.091
	SRR3591706	second leaf	1.893
	SRR3591707	mature leaf	1.715
	SRR3591708	Shoot apex	1.477
	SRR3591709	Stem	5.314
	SRR3591710	White floral bud	1.387
	SRR3591711	White flower	2.144
	SRR3591712	Green floral bud	3.070
	SRR3591713	Yellow flower	1.665
SRP173429	SRR8316895	Juvenile bud stage	1.123
	SRR8316896	Juvenile bud stage	2.167
	SRR8316897	Juvenile bud stage	2.175
	SRR8316894	Third green stage	0.983
	SRR8316900	Third green stage	1.705
	SRR8316901	Third green stage	2.034
	SRR8316898	Complete white stage	0.335
	SRR8316899	Complete white stage	2.466
	SRR8316903	Complete white stage	0.336
	SRR8316902	Silver flowering stage	0.443
	SRR8316904	Silver flowering stage	0.664
	SRR8316905	Silver flowering stage	0.098
	SRR8316906	Gold flowering stage	0.574
	SRR8316907	Gold flowering stage	0.320
	SRR8316908	Gold flowering stage	1.316
SRP132670	SRR6706286	Control	0.749
	SRR6706287	Light intensity 50%	0.987
	SRR6706288	Light intensity 20%	1.033
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.548
	CNS0095593	Slightly white alabastrum(diploid) 2	0.624
	CNS0095594	Slightly white alabastrum(diploid) 3	1.403
	CNS0095595	Whole white alabastrum(diploid) 2	1.111
	CNS0095596	Whole white alabastrum(diploid) 3	0.142
	CNS0095597	Whole white alabastrum(diploid) 4	0.848
	CNS0095598	Silvery flower (diploied) 1	2.493
	CNS0095599	Silvery flower (diploied) 2	2.564
	CNS0095600	Silvery flower (diploied) 3	1.557
	CNS0095601	Golden flower (diploid) 1	1.030
	CNS0095602	Golden flower (diploid) 2	1.369
	CNS0095603	Golden flower (diploid) 3	1.363
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.538
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.604
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.929
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.257
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.098
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.474
	CNS0095610	Silvery flower (tetraploid) 1	1.947
	CNS0095611	Silvery flower (tetraploid) 2	1.517
	CNS0095612	Silvery flower (tetraploid) 3	1.672
	CNS0095613	Golden flower (tetraploid) 1	1.361
	CNS0095614	Golden flower (tetraploid) 2	1.415
	CNS0095615	Golden flower (tetraploid) 3	0.315
CRA001975	CRR073297	Stem 1	1.230
	CRR073298	Stem 2	1.020
	CRR073299	Stem 3	0.912
	CRR073300	Leaf 1	1.750
	CRR073301	Leaf 2	1.123
	CRR073302	Leaf 3	0.805
	CRR073303	Juvenile bud 1	0.722
	CRR073304	Juvenile bud 2	1.046
	CRR073305	Juvenile bud 3	1.091
	CRR073306	Third green 1	0.376
	CRR073307	Third green 2	0.540
	CRR073308	Third green 3	0.049
	CRR073309	Second white 1	0.805
	CRR073310	Second white 2	0.065
	CRR073311	Second white 3	0.204
	CRR073312	Silver flowering 1	0.395
	CRR073313	Silver flowering 2	0.230
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.082
	CRR073316	Gold flowering 2	2.352
	CRR073317	Gold flowering 3	1.584
	CRR073318	Tawny withering 1	1.754
	CRR073319	Tawny withering 2	2.735
	CRR073320	Tawny withering 3	0.456