Gene detail

Detail information of GWHGAAZE027793

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006385019.1	0	hypothetical protein POPTR_0004s23120g [Populus trichocarpa]
COG	YP_001520266.1	0.000000001	WD repeat-containing protein
Swissprot	tr\|A8ID74\|BOP1_CHLRE	0	Ribosome biogenesis protein BOP1 homolog {ECO:0000255\|HAMAP-Rule:MF_03027}
trEMBL	tr\|U5GKE1\|U5GKE1_POPTR	0	Ribosome biogenesis protein BOP1 homolog {ECO:0000256\|HAMAP-Rule:MF_03027}
TAIR10	AT2G40360.1	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	28132240	28140737	+
GWHAAZE00000008	mRNA	28132240	28140737	+
GWHAAZE00000008	exon	28132240	28132350	+
GWHAAZE00000008	exon	28133297	28133428	+
GWHAAZE00000008	exon	28133543	28133677	+
GWHAAZE00000008	exon	28134139	28134293	+
GWHAAZE00000008	exon	28134709	28134826	+
GWHAAZE00000008	exon	28134921	28135022	+
GWHAAZE00000008	exon	28135452	28135608	+
GWHAAZE00000008	exon	28135728	28135836	+
GWHAAZE00000008	exon	28136118	28136220	+
GWHAAZE00000008	exon	28136301	28136451	+
GWHAAZE00000008	exon	28136555	28136687	+
GWHAAZE00000008	exon	28137263	28137366	+
GWHAAZE00000008	exon	28137494	28137561	+
GWHAAZE00000008	exon	28138272	28138327	+
GWHAAZE00000008	exon	28138482	28138708	+
GWHAAZE00000008	exon	28138841	28138925	+
GWHAAZE00000008	exon	28139633	28139811	+
GWHAAZE00000008	exon	28140652	28140737	+
GWHAAZE00000008	CDS	28132240	28132350	+
GWHAAZE00000008	CDS	28133297	28133428	+
GWHAAZE00000008	CDS	28133543	28133677	+
GWHAAZE00000008	CDS	28134139	28134293	+
GWHAAZE00000008	CDS	28134709	28134826	+
GWHAAZE00000008	CDS	28134921	28135022	+
GWHAAZE00000008	CDS	28135452	28135608	+
GWHAAZE00000008	CDS	28135728	28135836	+
GWHAAZE00000008	CDS	28136118	28136220	+
GWHAAZE00000008	CDS	28136301	28136451	+
GWHAAZE00000008	CDS	28136555	28136687	+
GWHAAZE00000008	CDS	28137263	28137366	+
GWHAAZE00000008	CDS	28137494	28137561	+
GWHAAZE00000008	CDS	28138272	28138327	+
GWHAAZE00000008	CDS	28138482	28138708	+
GWHAAZE00000008	CDS	28138841	28138925	+
GWHAAZE00000008	CDS	28139633	28139811	+
GWHAAZE00000008	CDS	28140652	28140737	+

Transcript Sequence
>GWHTAAZE027827 ATGACAACAGATCCTGTTGAGCGTAGCGATAGCAGCGGTGACGAAGATTTAAGTGAATTGAGCATTGAGGCGAGTCATGATGTTCGAAAGCAAAGAAAATTAACTCCGGAGGCTGATGTTCACCAAAGTGATGACGGCTCAAGTGATGAGGTTGGTAGTGATCATGATTATAATGATGACGATCACAGTGAAAGTGAAGAATCCGATCAAAACATTGAGGGGAGTGATTCATCAGAAGATGAGGACGATGTTTACACAAGTGAAGTAGAGGGCACTAGTGATCATGGTGATGGTGATAATAATCATGGTAAAGAAGATCAAAGTGAAAGCGAAGAGTCCCATCATGGAGTCGAGGAGAGTGATTCTTCGGAAGATGAGGTTGCTCCTCGGAATACAGTTGGGGATGTTCCCCTCAGATGGTACGAGGATGAAGAACACATTGGGTATGATATTTCTGGTAAGAAGTTGAAGAAAAAGGAGAGACAAGATGCACTAAATTCATTTCTGGCAAATGCTGATGACTCAAAAAATTGGCGCAAGATTTATGACGAGTATAATGATGAGGAGGTTGAACTTACAAAAGAACAAACAAAACTCATCCGTAGATTGCTTAAAGGAAAGGCACCACATGCTGACTTTGATCCATATTCGCCTTATGTTGATTGGTTCGCCTGGGACGGTGCTAAACATCCACTTTCAAATGCACCAGAACCCAAGAGGCGTTTTATTCCTTCCAAGTGGGAGAGTAAAAAGGTTGTTCAGTATGTTAGGGCGATTAGAAAAGGACTCATAAAATTTGATAAGCCAAAGGAAGAACCAAGGTTCTATCACTTGTGGGGAGATGATTCTAGCTCTAAAGAAAAGTCTGGTGGATTGGCATATATACCTGCACCAAAGCCTAAGTTGCCAGGTCATGAGGAATCCTATAATCCTTCTTTAGAATACATTCCAACACAGGAAGAGATTAATCAATACCAGCTTATGTTTGAGGAAGACCGGCCTAAATTTATTCCAAAACGGTTTACATCATTGAGAAGTGTTCCGGCATATGATAAATCCCTCAAAGAATCTTTTGAGCGTTGTTTGGATCTCTACTTGTGCCCGAGAGTCCGGAAGAAACGTATTAATATTGATCCCGAGTCATTAAAGCCCAAGCTCCCTAGCCGCAAGGATCTACAGCCTTACCCAACAACATGTTATTTAGAGTACAGAGGACATAACGGTCCAGTTATGTCTATATCTACAGATTCATCAGGGCAGTGGATTGCCTCTGGTTCAAGTGATGGAACTGTGCGTATTTGGGAGGTTGAAACTGGAAGATGTCTTAGAGTCTTTGAGATAGGCGAAGAGGTCAAGCATGTGGCGTGGAATCCTTCTCCTGAGCTTCCAATCTTGGCTGTTGCTGCGGGGCAAGATGTATTTCTCTTGAATGCCGGTTTTGAGGAAGAGGAACAGAGAAGGGTTAAAGAGTTATTGCACCTTGAAACTCCTATAAAAGTAGATGACTCTGGTAATAGTTCATTTGTTACCTGGGGTCAAGATGATGAACATGAGGGAATCAAGTTAAAGCACTTTAAGAGTGTTGCTTCAGTAGAATGGCATCGGAAGGGAGATTACTTCTCTATAGTTATGCTCATGTCGAAAGCAATACTAATACACCAGCTTTCAAAGAAAGTTACTCAAAGAATTCCATTCAAATTGCATGGTCTTCCGGTGTCAACAGCTTTCCATCCAACTCGTTCTGTCTTTTTCATCTCGACAAAAAAAAACGTTCGTGTTTATGATCTACTTAAGCTAAAACTCATCAAGAAGCTTGAATCTGGGGCCCGTGAAGTTTCCTCGATTTCCGTTCATCCTGGTGGCGATAATGTTATTGTCGGGACCAGAGAAGGAAAGTTGGGTTGGTTTGATATGGATCTTTCCTCTAAACCTTACAGAATTCTCAAATGCCACCCAAAAGACGTAACAAATGTGGCCTTTCATCGTACGTACCCTTTGTTTGCATCGTGTTCTGATGATTGCACAGCTTATGTTTTTCATGGAATGGTTTATTCTGATTTAAACCAGAATCCTCTTATTGTTCCTTTGGAAATTCTTCGAGGGCATTCAAGCACTAATGGGAGAGGAGTGATGGATTGCAAGTTCCACCCTAGACAGCCGTGGCTATTCACTGCCGGTGCTGATTCGGTGATAAAGCTCTTCTGTAATTAA

Network for GWHGAAZE027793

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08145.13	BOP1NT	141	396	6.00E-102
PF00400.33	WD40	399	434	3.20E-09
PF00400.33	WD40	643	679	0.00025
PF00400.33	WD40	695	734	0.001

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006364	biological_process	rRNA processing
GO:0042254	biological_process	ribosome biogenesis
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.684
	SRR3591706	second leaf	3.598
	SRR3591707	mature leaf	3.825
	SRR3591708	Shoot apex	5.527
	SRR3591709	Stem	3.208
	SRR3591710	White floral bud	2.396
	SRR3591711	White flower	3.170
	SRR3591712	Green floral bud	1.767
	SRR3591713	Yellow flower	2.156
SRP173429	SRR8316895	Juvenile bud stage	4.986
	SRR8316896	Juvenile bud stage	7.515
	SRR8316897	Juvenile bud stage	3.777
	SRR8316894	Third green stage	2.734
	SRR8316900	Third green stage	6.451
	SRR8316901	Third green stage	6.354
	SRR8316898	Complete white stage	3.509
	SRR8316899	Complete white stage	9.795
	SRR8316903	Complete white stage	5.699
	SRR8316902	Silver flowering stage	3.580
	SRR8316904	Silver flowering stage	5.249
	SRR8316905	Silver flowering stage	3.069
	SRR8316906	Gold flowering stage	9.878
	SRR8316907	Gold flowering stage	8.793
	SRR8316908	Gold flowering stage	11.499
SRP132670	SRR6706286	Control	10.683
	SRR6706287	Light intensity 50%	9.203
	SRR6706288	Light intensity 20%	9.290
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.941
	CNS0095593	Slightly white alabastrum(diploid) 2	2.590
	CNS0095594	Slightly white alabastrum(diploid) 3	3.049
	CNS0095595	Whole white alabastrum(diploid) 2	2.860
	CNS0095596	Whole white alabastrum(diploid) 3	2.298
	CNS0095597	Whole white alabastrum(diploid) 4	2.314
	CNS0095598	Silvery flower (diploied) 1	5.205
	CNS0095599	Silvery flower (diploied) 2	4.334
	CNS0095600	Silvery flower (diploied) 3	6.874
	CNS0095601	Golden flower (diploid) 1	4.176
	CNS0095602	Golden flower (diploid) 2	7.414
	CNS0095603	Golden flower (diploid) 3	6.067
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.179
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.407
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.576
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.552
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.725
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.239
	CNS0095610	Silvery flower (tetraploid) 1	6.237
	CNS0095611	Silvery flower (tetraploid) 2	4.451
	CNS0095612	Silvery flower (tetraploid) 3	5.425
	CNS0095613	Golden flower (tetraploid) 1	2.043
	CNS0095614	Golden flower (tetraploid) 2	4.857
	CNS0095615	Golden flower (tetraploid) 3	3.971
CRA001975	CRR073297	Stem 1	4.575
	CRR073298	Stem 2	3.147
	CRR073299	Stem 3	3.408
	CRR073300	Leaf 1	3.419
	CRR073301	Leaf 2	3.238
	CRR073302	Leaf 3	1.739
	CRR073303	Juvenile bud 1	1.835
	CRR073304	Juvenile bud 2	2.105
	CRR073305	Juvenile bud 3	4.673
	CRR073306	Third green 1	0.601
	CRR073307	Third green 2	0.775
	CRR073308	Third green 3	1.302
	CRR073309	Second white 1	1.990
	CRR073310	Second white 2	2.115
	CRR073311	Second white 3	1.716
	CRR073312	Silver flowering 1	2.675
	CRR073313	Silver flowering 2	2.260
	CRR073314	Silver flowering 3	1.457
	CRR073315	Gold flowering 1	3.096
	CRR073316	Gold flowering 2	4.033
	CRR073317	Gold flowering 3	2.051
	CRR073318	Tawny withering 1	1.712
	CRR073319	Tawny withering 2	2.282
	CRR073320	Tawny withering 3	1.498