Gene detail

Detail information of GWHGAAZE027795

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006494367.1	0	PREDICTED: ribosome biogenesis protein BOP1 homolog [Citrus sinensis]
COG	YP_001517803.1	3E-11	WD-40 repeat-containing protein
Swissprot	tr\|A8ID74\|BOP1_CHLRE	0	Ribosome biogenesis protein BOP1 homolog {ECO:0000255\|HAMAP-Rule:MF_03027}
trEMBL	tr\|U5GKE1\|U5GKE1_POPTR	0	Ribosome biogenesis protein BOP1 homolog {ECO:0000256\|HAMAP-Rule:MF_03027}
TAIR10	AT2G40360.1	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	28329002	28337547	-
GWHAAZE00000008	mRNA	28329002	28337547	-
GWHAAZE00000008	exon	28329002	28329087	-
GWHAAZE00000008	exon	28329928	28330106	-
GWHAAZE00000008	exon	28330821	28330905	-
GWHAAZE00000008	exon	28331042	28331179	-
GWHAAZE00000008	exon	28331411	28331483	-
GWHAAZE00000008	exon	28332190	28332257	-
GWHAAZE00000008	exon	28332384	28332487	-
GWHAAZE00000008	exon	28333092	28333224	-
GWHAAZE00000008	exon	28333333	28333483	-
GWHAAZE00000008	exon	28333564	28333666	-
GWHAAZE00000008	exon	28333948	28334056	-
GWHAAZE00000008	exon	28334177	28334333	-
GWHAAZE00000008	exon	28334774	28334875	-
GWHAAZE00000008	exon	28334970	28335087	-
GWHAAZE00000008	exon	28335503	28335657	-
GWHAAZE00000008	exon	28336112	28336246	-
GWHAAZE00000008	exon	28336361	28336492	-
GWHAAZE00000008	exon	28337437	28337547	-
GWHAAZE00000008	CDS	28337437	28337547	-
GWHAAZE00000008	CDS	28336361	28336492	-
GWHAAZE00000008	CDS	28336112	28336246	-
GWHAAZE00000008	CDS	28335503	28335657	-
GWHAAZE00000008	CDS	28334970	28335087	-
GWHAAZE00000008	CDS	28334774	28334875	-
GWHAAZE00000008	CDS	28334177	28334333	-
GWHAAZE00000008	CDS	28333948	28334056	-
GWHAAZE00000008	CDS	28333564	28333666	-
GWHAAZE00000008	CDS	28333333	28333483	-
GWHAAZE00000008	CDS	28333092	28333224	-
GWHAAZE00000008	CDS	28332384	28332487	-
GWHAAZE00000008	CDS	28332190	28332257	-
GWHAAZE00000008	CDS	28331411	28331483	-
GWHAAZE00000008	CDS	28331042	28331179	-
GWHAAZE00000008	CDS	28330821	28330905	-
GWHAAZE00000008	CDS	28329928	28330106	-
GWHAAZE00000008	CDS	28329002	28329087	-

Transcript Sequence
>GWHTAAZE027829 ATGACAACAGATCCTGTTGAGCGTAGCGATAGCAGCGGTGACGAAGATTTAAGTGAATTGAGCATTGAGGCGAGTCATGATGTTCGAAAGCAAAGAAAATTAACTCCGGAGGCTGATGTTCACCAAAGTGATGACGGCTCAAGTGATGAGGTTGATAGTGATCATGATTATAATGATGACGATCACAGTGAAAGTGAAGAATCCGATCAAAACATTGAGGGGAGTGATTCATCAGAAGATGAGGACGATGTTTACACAAGTGAAGTAGAGGGCACTAGTGATCATGGTGATGGTGATAATAATCATGGTAAAGAAGATCAAAGTGAAAGCGAAGAATCCCATCATGGAGTTGAGGAGAGTGATTCTTCGGAAGATGAGGTTGCTCCTCGGAATACAGTTGGGGATGTTCCCCTCAGATGGTACGAGGATGAAGAACACATTGGGTATGATATTTCTGGTAAGAAGTTGAAGAAAAAGGAGAGACAAGATGCACTAAATTCATTTCTGGCAAATGCTGATGACTCAAAAAATTGGCGCAAGATTTATGACGAGTATAATGATGAGGAGGTTGAACTTACAAAAGAACAAACAAAACTCATCCGTAGATTGCTTAAAGGAAAGGCACCACATGCTGACTTTGATCCATATGCGCCTTATGTTGATTGGTTCGCCTGGGACGGTGCTAAACATCCACTTTCAAATGCACCAGAACCCAAGAGGCGTTTTATTCCTTCCAAGTGGGAGAGTAAAAGGGTTGTTCAGTATGTTAGGGCGATTAGAAAAGGACTCATAAAATTTGATAAGCCAAAGGAAGAACCAAGGTTCTATCACTTGTGGGGAGATGATTCTAGCTCTAAAGAAAAGTCTGGTGGATTGGCATATATACCTGCACCAAAGCCTAAGTTGCCAGGTCATGAGGAATCCTTTAATCCTTCTTTAGAATACATTCCAACACAGGAAGAGATTAATCAATACCAGCTTATGTTTGAGGAAGACCGGCCTAAATTTATTCCAAAACGGTTTACATCATTGAGAAGTGTTCCGGCATATGATAAATCCCTCAAAGAATCTTTTGAGCGTTGTTTGGATCTCTACTTGTGCCCGAGAGTCCGGAAGAAACGTATTAATATTGATCCCGAGTCATTAAAGCCCAAGCTCCCTAGCCGCAAGGATCTAAAGCCTTACCCAACAACATGTTATTTAGAGTACAGAGGACATAACGGTCCGGTTATGTCTATATCTACAGATTCATCAGGGCAGTGGATTGCCTCTGGTTCAAGTGATGGAACTGTGCGTATTTGGGAGGTTGAAACTGGAAGATGTCTTAGAGTCTTTGAGATAGGCGAAGAGGTCAAGCATGTGGCGTGGAATCCTTCTCCTGAGCTTCCAATCTTGGCCGTTGCTGCGGGGCAAGATGTATTTCTCTTGAATGCCGGTTTCGAGGAAGAGGAACAGAGAAGGGTTAAAGAATTATTGCACCTTGAAGCTCCTATAACAGTAGATGACTCTGGTAAGAGTTCATTTGTTACCTGGGGTCAAGATGATGAACATGAGGGAATCAAGTTAAAGCACTTTAAGAGTGTTGCTTCAGTAGAATGGCATCGGAAGGGAGATTACTTCTCTATAGTTATGCCGTCTGATATCCTTTCTTCTTTCCATCCAACTCGTTCTGTCTTTTTCATCTCGACAAAAAAGAACGTTCGTGTTTATGATCTACTTAAGCTAAAACTCATCAAGAAGCTTGAATCTGGGGCTCGTGAAGTTTCCTCGATTTCCGTTCATCCTGGTGGCGATAATGTTATTGTCGGGACCAGAGAAGGAAAGTTGGGTTGGTTTGATATGGATCTTTCCTCTAAACCTTACAGAATTCTCAAATGCCACCCAAAAGACGTAACAAATGTGGCCTTTCATCGTACATACCCTTTGTTTGCATCGTGTTCTGATGATTGCACAGCATATGTTTTTCATGGAATGGTTTATTCAGATTTAAACCAGAATCCTCTTATTGTTCCTTTGGAAATTCTTCGAGGGCATTCAAGCACTAATGGGAGAGGAGTGATGGATTGCAAGTTCCACCCTAGACAGCCGTGGCTATTCACTGCCGGTGCTGATTCGGTGATAAAGCTCTTCTGTAATTAA

Network for GWHGAAZE027795

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08145.13	BOP1NT	141	396	1.90E-101
PF00400.33	WD40	399	434	3.10E-09
PF00400.33	WD40	619	655	0.00024
PF00400.33	WD40	671	710	0.001

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006364	biological_process	rRNA processing
GO:0042254	biological_process	ribosome biogenesis
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.736
	SRR3591706	second leaf	17.773
	SRR3591707	mature leaf	18.028
	SRR3591708	Shoot apex	21.043
	SRR3591709	Stem	17.851
	SRR3591710	White floral bud	10.512
	SRR3591711	White flower	17.451
	SRR3591712	Green floral bud	11.295
	SRR3591713	Yellow flower	12.632
SRP173429	SRR8316895	Juvenile bud stage	6.578
	SRR8316896	Juvenile bud stage	9.430
	SRR8316897	Juvenile bud stage	4.584
	SRR8316894	Third green stage	3.448
	SRR8316900	Third green stage	9.148
	SRR8316901	Third green stage	8.774
	SRR8316898	Complete white stage	5.053
	SRR8316899	Complete white stage	13.247
	SRR8316903	Complete white stage	8.544
	SRR8316902	Silver flowering stage	4.965
	SRR8316904	Silver flowering stage	9.017
	SRR8316905	Silver flowering stage	4.534
	SRR8316906	Gold flowering stage	15.632
	SRR8316907	Gold flowering stage	14.121
	SRR8316908	Gold flowering stage	15.411
SRP132670	SRR6706286	Control	11.760
	SRR6706287	Light intensity 50%	10.681
	SRR6706288	Light intensity 20%	10.513
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.162
	CNS0095593	Slightly white alabastrum(diploid) 2	4.650
	CNS0095594	Slightly white alabastrum(diploid) 3	4.542
	CNS0095595	Whole white alabastrum(diploid) 2	3.498
	CNS0095596	Whole white alabastrum(diploid) 3	3.319
	CNS0095597	Whole white alabastrum(diploid) 4	3.364
	CNS0095598	Silvery flower (diploied) 1	6.450
	CNS0095599	Silvery flower (diploied) 2	7.278
	CNS0095600	Silvery flower (diploied) 3	10.107
	CNS0095601	Golden flower (diploid) 1	4.673
	CNS0095602	Golden flower (diploid) 2	9.910
	CNS0095603	Golden flower (diploid) 3	8.049
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.950
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.930
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.200
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.577
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.206
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.839
	CNS0095610	Silvery flower (tetraploid) 1	24.472
	CNS0095611	Silvery flower (tetraploid) 2	23.672
	CNS0095612	Silvery flower (tetraploid) 3	23.893
	CNS0095613	Golden flower (tetraploid) 1	11.306
	CNS0095614	Golden flower (tetraploid) 2	20.234
	CNS0095615	Golden flower (tetraploid) 3	16.901
CRA001975	CRR073297	Stem 1	5.239
	CRR073298	Stem 2	5.012
	CRR073299	Stem 3	4.714
	CRR073300	Leaf 1	5.432
	CRR073301	Leaf 2	4.164
	CRR073302	Leaf 3	2.579
	CRR073303	Juvenile bud 1	3.036
	CRR073304	Juvenile bud 2	3.557
	CRR073305	Juvenile bud 3	4.712
	CRR073306	Third green 1	1.664
	CRR073307	Third green 2	1.353
	CRR073308	Third green 3	1.952
	CRR073309	Second white 1	2.717
	CRR073310	Second white 2	3.791
	CRR073311	Second white 3	4.602
	CRR073312	Silver flowering 1	3.194
	CRR073313	Silver flowering 2	2.333
	CRR073314	Silver flowering 3	3.077
	CRR073315	Gold flowering 1	3.550
	CRR073316	Gold flowering 2	3.847
	CRR073317	Gold flowering 3	2.486
	CRR073318	Tawny withering 1	4.943
	CRR073319	Tawny withering 2	1.697
	CRR073320	Tawny withering 3	3.165