Gene detail

Detail information of GWHGAAZE027804

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002314522.2	0	hypothetical protein POPTR_0010s07340g [Populus trichocarpa]
COG	YP_005034908.1	5E-43	putative beta-amylase precursor
Swissprot	tr\|O23553\|BAM3_ARATH	0	Beta-amylase 3, chloroplastic (Precursor)
trEMBL	tr\|W6E8G3\|W6E8G3_CAMSI	0	Chloroplast beta-amylase 3 {ECO:0000313\|EMBL:AHJ09602.1}
TAIR10	AT4G17090.1	0	chloroplast beta-amylase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	28681594	28684650	-
GWHAAZE00000008	mRNA	28681594	28684650	-
GWHAAZE00000008	exon	28681594	28682271	-
GWHAAZE00000008	exon	28682445	28682555	-
GWHAAZE00000008	exon	28683226	28683342	-
GWHAAZE00000008	exon	28683417	28683627	-
GWHAAZE00000008	exon	28684118	28684650	-
GWHAAZE00000008	CDS	28684118	28684650	-
GWHAAZE00000008	CDS	28683417	28683627	-
GWHAAZE00000008	CDS	28683226	28683342	-
GWHAAZE00000008	CDS	28682445	28682555	-
GWHAAZE00000008	CDS	28681594	28682271	-

Transcript Sequence
>GWHTAAZE027838 ATGGCTTTAACAGTTCGTTCTTCAACTTCTTTCATTAATCTAAAAGACACCATCAAAGTTTCAAAAACTCTTGATGACTTCTCGAGCTTGGTTTGTTTCGCACAAATCAAACCATCTTGCCATCTTCGGGTATGGAATTCAATGCAAGAAGCACAACTCTCACGAGAAAGAATTCCAACTTTAGAAGGAGAGAGAAATGAGGAGAGAGAAAAGCTCCACATGCTATCGAGTTCCCATAGCAAAAATGAATCGAGGGTGCCAGTTTTTGTGATGCTACCGCTAGACACCGTCTCGGTTGGGGGGAACTTGAGTAAGCCAAGAGCGATGAATGCTAGTTTGATGGCCTTGAAAAGCGCGGGAGTTGAAGGTGTCATGGTAGATGCTTGGTGGGGATTGGTGGAGAAAGATGGGCCTTTGAAGTATAATTGGGAGGGTTATGTTGAGCTTGTGAAGATGGTTCAAAAGCATGGGTTGAAGATCCAAGTAGTTATGTCTTTCCATCAGTGTGGAGGAAATGTTGGAGACTCTTGCAGCATCCCACTACCCCCATGGGCACTTGAAGAAATCAGCAAGAATCCTGACCTTGTCTACACGGACAGATCGGGTCGTAGAAATCCCGAGTACATCTCTTTGGGTTGCGATTCATTACCCGTGCTTAGAGGAAGAACACCCATTCAGGTCTACTCCGATTACATGAGGAGCTTCTGCCAAACATTCCAGGATTACTTGGGGGAGGTTATTGTGGCTATAGCATTCAAGAATGATCTTAGACCCTCCAATCTACTTGCCGTAAAGCTAAATTTTAGTTTTGCTAGCGGGAACACGTTGTTCAAAATGTGCTGTTTAACTAATTATGTCAATGAGGTTCAAGTGGGCATGGGCCCTTGTGGAGAGTTGAGATATCCATCCTATCCAGAAAGCAATGGAACCTGGAGGTTCCCAGGAATCGGAGAATTCCAATGCTACGATAAGTATATGAGGGCTTCACTAGAAGCATCAGCAGAGGCACTAGGAAAGAAAGACTGGGGAAAAAGCGGGCCCCATGATTCTGGTAATTATAACCAATTCCCCGAAGACATCGGATTCTTCAAGAGAGATGGTACATGGAAAAACGAGTACGGCCAATTCTTCCTCGATTGGTACTCCGCAAATCTATTAGAACACGGAAACAGAATCCTCGGAGCTGCAGAAGGAATATTCCAAGGATGTGGAGCTAAACTTTCCGGGAAAGTAGCTGGAATTCACTGGCACTACAAAACAAGATCCCATGCAGCCGAATTGACGGCTGGATATTACAATACTAGACATCATGATGGGTACCTACCAATAGCAAAAATGATGGGTAAACATGGGGTGGTTTTAAACTTTACGTGCATGGAAATGAGAGACAGAGAGCAGCCGGAGCATGCAAATTGCTCACCTGAAGGGTTAGTCAGGCAAGTAAAGATGGCGACGAAAGCTACCGGAACAGAACTCGCAGGAGAGAATGCTTTGGAGCGGTACGATGGAGGAGCATTTGCACAAGTAATGGCAACGAGTAGATTGGACTCTGGAAATGGATTGCGCGCTTTTACGTATTTAAGAATGAATAAGCAGTTGTTTGAAGAAAAATTGGAGGAATTTCGTGGAATTTGTGAAAAGCATGTCTGA

Network for GWHGAAZE027804

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01373.18	Glyco_hydro_14	89	251	8.70E-63
PF01373.18	Glyco_hydro_14	284	536	1.30E-91

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01177	E3.2.1.2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0000272	biological_process	polysaccharide catabolic process
GO:0016161	molecular_function	beta-amylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.167
	SRR3591706	second leaf	5.307
	SRR3591707	mature leaf	4.046
	SRR3591708	Shoot apex	4.183
	SRR3591709	Stem	3.636
	SRR3591710	White floral bud	5.421
	SRR3591711	White flower	7.504
	SRR3591712	Green floral bud	3.278
	SRR3591713	Yellow flower	6.583
SRP173429	SRR8316895	Juvenile bud stage	0.274
	SRR8316896	Juvenile bud stage	0.470
	SRR8316897	Juvenile bud stage	0.127
	SRR8316894	Third green stage	0.347
	SRR8316900	Third green stage	0.682
	SRR8316901	Third green stage	1.304
	SRR8316898	Complete white stage	0.965
	SRR8316899	Complete white stage	0.760
	SRR8316903	Complete white stage	2.001
	SRR8316902	Silver flowering stage	2.537
	SRR8316904	Silver flowering stage	2.844
	SRR8316905	Silver flowering stage	0.226
	SRR8316906	Gold flowering stage	0.448
	SRR8316907	Gold flowering stage	0.850
	SRR8316908	Gold flowering stage	1.091
SRP132670	SRR6706286	Control	4.998
	SRR6706287	Light intensity 50%	3.085
	SRR6706288	Light intensity 20%	2.116
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.493
	CNS0095593	Slightly white alabastrum(diploid) 2	0.398
	CNS0095594	Slightly white alabastrum(diploid) 3	0.629
	CNS0095595	Whole white alabastrum(diploid) 2	0.477
	CNS0095596	Whole white alabastrum(diploid) 3	0.048
	CNS0095597	Whole white alabastrum(diploid) 4	0.704
	CNS0095598	Silvery flower (diploied) 1	3.174
	CNS0095599	Silvery flower (diploied) 2	8.955
	CNS0095600	Silvery flower (diploied) 3	0.930
	CNS0095601	Golden flower (diploid) 1	1.848
	CNS0095602	Golden flower (diploid) 2	1.320
	CNS0095603	Golden flower (diploid) 3	1.791
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.041
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.090
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.777
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.197
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.134
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.761
	CNS0095610	Silvery flower (tetraploid) 1	3.112
	CNS0095611	Silvery flower (tetraploid) 2	1.456
	CNS0095612	Silvery flower (tetraploid) 3	6.417
	CNS0095613	Golden flower (tetraploid) 1	1.166
	CNS0095614	Golden flower (tetraploid) 2	2.671
	CNS0095615	Golden flower (tetraploid) 3	3.200
CRA001975	CRR073297	Stem 1	12.219
	CRR073298	Stem 2	11.855
	CRR073299	Stem 3	11.816
	CRR073300	Leaf 1	7.640
	CRR073301	Leaf 2	10.923
	CRR073302	Leaf 3	7.889
	CRR073303	Juvenile bud 1	8.743
	CRR073304	Juvenile bud 2	24.376
	CRR073305	Juvenile bud 3	12.722
	CRR073306	Third green 1	49.398
	CRR073307	Third green 2	36.758
	CRR073308	Third green 3	31.796
	CRR073309	Second white 1	1.428
	CRR073310	Second white 2	2.644
	CRR073311	Second white 3	2.951
	CRR073312	Silver flowering 1	18.626
	CRR073313	Silver flowering 2	20.765
	CRR073314	Silver flowering 3	16.009
	CRR073315	Gold flowering 1	194.786
	CRR073316	Gold flowering 2	345.322
	CRR073317	Gold flowering 3	148.465
	CRR073318	Tawny withering 1	18.914
	CRR073319	Tawny withering 2	21.753
	CRR073320	Tawny withering 3	12.750