Gene detail

Detail information of GWHGAAZE027807

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271886.1	0	PREDICTED: retinoblastoma-binding protein 5 homolog [Vitis vinifera]
COG	YP_001518591.1	3E-11	WD-40 repeat-containing protein
trEMBL	tr\|F6GVB5\|F6GVB5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43898.1}
TAIR10	AT3G21060.1	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	28739785	28748637	+
GWHAAZE00000008	mRNA	28739785	28748637	+
GWHAAZE00000008	exon	28739785	28739905	+
GWHAAZE00000008	exon	28744585	28745681	+
GWHAAZE00000008	exon	28746548	28746812	+
GWHAAZE00000008	exon	28748205	28748637	+
GWHAAZE00000008	CDS	28739785	28739905	+
GWHAAZE00000008	CDS	28744585	28745681	+
GWHAAZE00000008	CDS	28746548	28746812	+
GWHAAZE00000008	CDS	28748205	28748425	+
GWHAAZE00000008	three_prime_UTR	28748426	28748637	+

Transcript Sequence
>GWHTAAZE027841 CTGATTCTTGTTGCTTGTGTAGATCCACTGCAGGGGGATTTCCCTGAAGTGATAGAGGAGTATTTGGAACATGGGCTTATGAAATGTGTCGCCTTTAATCGCCGTGGAACTCTACTCGCAGCTGGGTGCTCTGATGGAACTTGTGTTATATGGGATTTTGAGACTAGAGGCATTTCAAAGGAACTCAAGGACAAGGACTGTGTTGCTGCAGTAACAAGTGTTTGTTGGTCAAAGTATGGTCACCGCATACTCGTATCCGCTGCCGATAAGTCATTAACACTTTGGGACGTCGTAAAGGGAGAAAAAATATCACGATCGACACTGCAGCAAACCCCACTACAGGCTCGTCTACATCCTGGTTCCACCATCCCTTCTATTTGTTTGGTGTGTCCTCTCTCATCCGCTCCAATGATTGTTGATCTGAACAGTGGAAACACAACTATGCTCCCGGTCTCATTATCTGACACGGGCACTGGTCCACCTGGACCCTCGCCTCCATCACGCAACAAATTTTCAGACGGGTCTCCCGCTTTTACTCCGACTACGGCGTGCTTTAACAAGTACGGGGATCTGGTTTATGCCGGTAATTCGAAAGGCGAAGTACTTATAATAGATTACGAAAAAAACCAAGTGCGTGGGATCGTTCCCATATCTGGAGGTGCTGTTATAAAGAATATTGTATTCAGCAGAGATGGGCAATATCTTCTTACAAACTCAAACGACCGTACGATTAGGATTTATGAGAACCTTTTGCCCTTGAAAAACGGACTTAAAGCCCTCGATGAATCGAATGAGATGAATGGTGAGCTTGATGGGATTGAGAAGCTGAGAGCCGTTGGATCTAAGTGTTTAGCCCTATTTCGGGAGTTTCAAGATTCGATCACTAGAGTGCACTGGAAAGTACCATGTTTTAGCGGTGATGGTGAGTGGGTTGTTGGTGGTTCTGCAAGCAAAGGGGAGCACAAGATCTATATATGGGATAGGGCTGGGCGGCTTGTAAAAATCCTTGAAGGTCCAAAGGAAGCACTGATAGATTTATCATGGCACCCCGTTCACCCAATTGTTGTTTCAGTTTCACTAACTGGCTTAGTATATATTTGGGCCAAAGATTATACCGAGAATTGGAGTGCATTCGCTCCAGATTTTAAGGAACTCGAGGAAAATGAGGAGTATGTAGAACGAGAAGATGAATTTGATCTGGTGCCTGAAACTGAAAAGGTGAAAGAATCAGATGTTAACGAAGATGATGAAGTGGATATTGTGATGGTGGAGAAGGATTCGGCTTTCAGCGATTCAGATATGTCACAGGAAGAAATATGCTTCTTGCCTGTAGATCCATGTCCTGATGTTCCTGAGCAGCAAGACAAGTGTGTTGGAAGTAGTTCAAAGCTAGGGGGGGACAGCAACCATTCTGGATCCCCTTTTTCAGAAGAAGCAGGACAGAATGGCCTAGCATTGAACCATGCATCCAGTCCAATCGAAGCAATGGATAATTCGGCGGCAGAGGACACAGGAGGCACACGCATGAAGAGAAAACGTAGACTGTCAGAAAAGGTTCTAGAATTGCAGGCCGAGAAGGTGAAGAAACCTTTACAGAAGAAGCAGCCTTCTGGTAAATCTTCAAAATCTAAAACTAAATCTGAAGTTGAAGTTGACACTAGTACCTCTTTATTTGCCGATGATGTTAATCATGACGATGATTAAGATTAAAATATATTTATGAAAATCTCTTTTTACCGGATGAGTGATTGGTATATTTGAATATATTTTCCGTAGTTATAGTTATTGGCGGGGGTAATGTGGTCTATTTACTTGTGCCTTATTTGATGGTCACTTGTTAGTACTTCTTTTAGATGATTGATCAGTTTTCTTTATCTGATGCATGTACTAATTTTTGTGTATTGCGAAGTATGAAA

Network for GWHGAAZE027807

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	28	52	0.00047
PF00400.33	WD40	71	96	0.048
PF00400.33	WD40	223	247	0.21
PF00400.33	WD40	283	327	0.089

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.383
	SRR3591706	second leaf	9.067
	SRR3591707	mature leaf	5.098
	SRR3591708	Shoot apex	17.419
	SRR3591709	Stem	10.020
	SRR3591710	White floral bud	11.099
	SRR3591711	White flower	13.836
	SRR3591712	Green floral bud	15.669
	SRR3591713	Yellow flower	10.263
SRP173429	SRR8316895	Juvenile bud stage	12.307
	SRR8316896	Juvenile bud stage	16.660
	SRR8316897	Juvenile bud stage	8.119
	SRR8316894	Third green stage	6.120
	SRR8316900	Third green stage	16.968
	SRR8316901	Third green stage	16.426
	SRR8316898	Complete white stage	4.549
	SRR8316899	Complete white stage	18.833
	SRR8316903	Complete white stage	7.694
	SRR8316902	Silver flowering stage	5.768
	SRR8316904	Silver flowering stage	6.617
	SRR8316905	Silver flowering stage	3.464
	SRR8316906	Gold flowering stage	11.661
	SRR8316907	Gold flowering stage	10.898
	SRR8316908	Gold flowering stage	11.678
SRP132670	SRR6706286	Control	15.748
	SRR6706287	Light intensity 50%	15.445
	SRR6706288	Light intensity 20%	16.950
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.672
	CNS0095593	Slightly white alabastrum(diploid) 2	17.567
	CNS0095594	Slightly white alabastrum(diploid) 3	19.976
	CNS0095595	Whole white alabastrum(diploid) 2	15.375
	CNS0095596	Whole white alabastrum(diploid) 3	14.392
	CNS0095597	Whole white alabastrum(diploid) 4	14.873
	CNS0095598	Silvery flower (diploied) 1	13.417
	CNS0095599	Silvery flower (diploied) 2	11.376
	CNS0095600	Silvery flower (diploied) 3	12.984
	CNS0095601	Golden flower (diploid) 1	11.473
	CNS0095602	Golden flower (diploid) 2	12.639
	CNS0095603	Golden flower (diploid) 3	13.343
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.933
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.130
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.783
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.234
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.734
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.123
	CNS0095610	Silvery flower (tetraploid) 1	14.111
	CNS0095611	Silvery flower (tetraploid) 2	12.895
	CNS0095612	Silvery flower (tetraploid) 3	14.272
	CNS0095613	Golden flower (tetraploid) 1	9.355
	CNS0095614	Golden flower (tetraploid) 2	13.485
	CNS0095615	Golden flower (tetraploid) 3	11.951
CRA001975	CRR073297	Stem 1	16.978
	CRR073298	Stem 2	15.431
	CRR073299	Stem 3	14.921
	CRR073300	Leaf 1	15.894
	CRR073301	Leaf 2	15.154
	CRR073302	Leaf 3	15.252
	CRR073303	Juvenile bud 1	14.296
	CRR073304	Juvenile bud 2	13.438
	CRR073305	Juvenile bud 3	12.898
	CRR073306	Third green 1	3.753
	CRR073307	Third green 2	4.481
	CRR073308	Third green 3	4.788
	CRR073309	Second white 1	6.203
	CRR073310	Second white 2	5.424
	CRR073311	Second white 3	3.911
	CRR073312	Silver flowering 1	4.931
	CRR073313	Silver flowering 2	3.705
	CRR073314	Silver flowering 3	4.656
	CRR073315	Gold flowering 1	7.759
	CRR073316	Gold flowering 2	11.199
	CRR073317	Gold flowering 3	5.720
	CRR073318	Tawny withering 1	9.267
	CRR073319	Tawny withering 2	7.780
	CRR073320	Tawny withering 3	10.257