Gene detail

Detail information of GWHGAAZE027827

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP12995.1	5.5274E-171	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8RX22\|MIP1_ARATH	7E-122	MND1-interacting protein 1
trEMBL	tr\|A0A068UWR5\|A0A068UWR5_COFCA	2E-171	Coffea canephora DH200=94 genomic scaffold, scaffold_72 {ECO:0000313\|EMBL:CDP12995.1}
TAIR10	AT2G35330.2	3E-99	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	29167923	29171623	-
GWHAAZE00000008	mRNA	29167923	29171623	-
GWHAAZE00000008	exon	29167923	29168411	-
GWHAAZE00000008	exon	29171027	29171623	-
GWHAAZE00000008	CDS	29171027	29171623	-
GWHAAZE00000008	CDS	29167923	29168411	-

Transcript Sequence
>GWHTAAZE027861 ATGGTGAACTTGATGTTGAGTAAATTCCGGGATTTGAATCTTGATGGGAATATGGAGTACGTCCCCGAGGATCAAAAAGACGAGATGATTTTGAGTTTGTTTCATCAGATAAAAGATCTCGAGGGACAAGTAAAGGAGCGAAAGGAGTGGGCTCACCAAAAGGCAATGCAAGCTGCAAGAAAGCTCAGCCATGATCTTACTGAGCTCAAGAGTTTGAGGATGGAAAGGGAAGAGATCCAACGGCTGAAGCAAGGGGAAACCACCCCTGAGGACCCCACGATGAATAGACTTAAGGATATGGAGAAAGCTCTGAGGACAGCTAGTGGCCAAGTGGATAGTGCAAATTCGGCTGTGAAAAAACTTGAGACCGAGAATGCAGAAATTAGAGCAGAAATGGAGGCTTCAAAGTTAAGTGCTTCGGAATCAGTGAAGGCTTGTTTAGATATTGCAAAGAGGGAAAAGAAATGTTTGAAGAGGCTTTTGGCTTGGGAGAAACAGAAGGCTAAGTTGCAGGAGGAAATTGCAGAGGAGAAACAGAAGATTTTGGAGTTAGAAGAAGAGTCGGTTCAGATCAAGGTGGCTCAGAAGGTTGCTGAGGCAAAATGGAGGCAGGCGCAGAAGGCAAAAGAGCTAGCCCTAGCAAAAGTAGAGGAAGATCGCCGCCTCAAAGAAGCAACCGAGGCAGCCATCAAGAGAAAACAAGAGGCCTTGCGTCTAAAGATTGAAATAGACTTCCAACGCCACAAGGACGACCTCCAACGGCTTGAGCAAGAACTTTCCCGACTCAAATTCACCACTGAGTTACCCCCCCAAGGTGGGACCCCACGGCCCCCTCGAGGCCAGACCATCGATGGTCTAATTCAAGAACTAGAGGAGCTTGATGATTCAACAGAGAAAGAAGCAAGCTACAGTAGGGAATGTGTAATTTGTATGAAAGAAGAAGTTTCCGTTGTTTTTTTGCCTTGTGCCCATCAGGTTCTTTGCGCCAGTTGCAATGAGAGTTATATGATGAAGGGTAGGGCTATATGCCCATGTTGCCGGGTCCAGATAGAACAGAGGATTCGTGTTTTTGGGGCGAGCTCATAA

Network for GWHGAAZE027827

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0145

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13920.7	zf-C3HC4_3	305	352	2.70E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.846
	SRR3591706	second leaf	10.371
	SRR3591707	mature leaf	11.251
	SRR3591708	Shoot apex	12.644
	SRR3591709	Stem	14.005
	SRR3591710	White floral bud	12.914
	SRR3591711	White flower	18.447
	SRR3591712	Green floral bud	15.111
	SRR3591713	Yellow flower	12.090
SRP173429	SRR8316895	Juvenile bud stage	11.995
	SRR8316896	Juvenile bud stage	13.122
	SRR8316897	Juvenile bud stage	8.287
	SRR8316894	Third green stage	6.024
	SRR8316900	Third green stage	15.519
	SRR8316901	Third green stage	14.627
	SRR8316898	Complete white stage	5.206
	SRR8316899	Complete white stage	18.108
	SRR8316903	Complete white stage	11.878
	SRR8316902	Silver flowering stage	9.430
	SRR8316904	Silver flowering stage	12.895
	SRR8316905	Silver flowering stage	5.035
	SRR8316906	Gold flowering stage	23.246
	SRR8316907	Gold flowering stage	17.603
	SRR8316908	Gold flowering stage	25.375
SRP132670	SRR6706286	Control	20.112
	SRR6706287	Light intensity 50%	17.774
	SRR6706288	Light intensity 20%	19.071
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.340
	CNS0095593	Slightly white alabastrum(diploid) 2	8.447
	CNS0095594	Slightly white alabastrum(diploid) 3	9.487
	CNS0095595	Whole white alabastrum(diploid) 2	7.263
	CNS0095596	Whole white alabastrum(diploid) 3	6.898
	CNS0095597	Whole white alabastrum(diploid) 4	6.517
	CNS0095598	Silvery flower (diploied) 1	16.832
	CNS0095599	Silvery flower (diploied) 2	14.346
	CNS0095600	Silvery flower (diploied) 3	21.218
	CNS0095601	Golden flower (diploid) 1	12.025
	CNS0095602	Golden flower (diploid) 2	17.093
	CNS0095603	Golden flower (diploid) 3	18.700
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.657
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.047
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.983
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.549
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.808
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.195
	CNS0095610	Silvery flower (tetraploid) 1	39.852
	CNS0095611	Silvery flower (tetraploid) 2	30.495
	CNS0095612	Silvery flower (tetraploid) 3	20.857
	CNS0095613	Golden flower (tetraploid) 1	14.988
	CNS0095614	Golden flower (tetraploid) 2	35.406
	CNS0095615	Golden flower (tetraploid) 3	13.815
CRA001975	CRR073297	Stem 1	17.396
	CRR073298	Stem 2	16.764
	CRR073299	Stem 3	17.698
	CRR073300	Leaf 1	20.481
	CRR073301	Leaf 2	20.972
	CRR073302	Leaf 3	9.214
	CRR073303	Juvenile bud 1	18.033
	CRR073304	Juvenile bud 2	12.309
	CRR073305	Juvenile bud 3	24.332
	CRR073306	Third green 1	4.987
	CRR073307	Third green 2	3.641
	CRR073308	Third green 3	5.962
	CRR073309	Second white 1	5.730
	CRR073310	Second white 2	7.050
	CRR073311	Second white 3	7.705
	CRR073312	Silver flowering 1	5.490
	CRR073313	Silver flowering 2	6.613
	CRR073314	Silver flowering 3	6.574
	CRR073315	Gold flowering 1	5.971
	CRR073316	Gold flowering 2	12.485
	CRR073317	Gold flowering 3	7.917
	CRR073318	Tawny withering 1	11.875
	CRR073319	Tawny withering 2	12.185
	CRR073320	Tawny withering 3	13.045