Gene detail

Detail information of GWHGAAZE027828

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP12995.1	1.3135E-134	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8RX22\|MIP1_ARATH	7E-86	MND1-interacting protein 1
trEMBL	tr\|A0A068UWR5\|A0A068UWR5_COFCA	5E-135	Coffea canephora DH200=94 genomic scaffold, scaffold_72 {ECO:0000313\|EMBL:CDP12995.1}
TAIR10	AT2G35330.1	7E-86	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	29171717	29172595	-
GWHAAZE00000008	mRNA	29171717	29172595	-
GWHAAZE00000008	exon	29171717	29172595	-
GWHAAZE00000008	CDS	29171717	29172595	-

Transcript Sequence
>GWHTAAZE027862 ATGGGTCGGACTAAACTCGATAACGAGCCTAAGAGTTTTATGGACAGGAATTCGTTATGCAAATCTATAATTGAGTCTGGTTTACGACATTTGAGTCACCAACTGGCTAGTAAAGAATCATCTCCGGACGCAAACCTTAGTCCTAATTTGGATGATTTTAATTGGGGTTACTGTACTGAAGTACAATTGGAGGAAATACTATTGAAGAACTTGGAGTTTGTGTATAACGAGGCTATCTCGAAGCTTGTTGCGTTGGGCTATGATGAGGATGTTGCCCTTAAAGCTATACTGAGGAACGGGCATTGCTACGGTGCAATGGATGTGTTGACTAATATAATGCACAACTCTTTGGCTTATTTGAATAGTGGGGGTGGTGGAAATAATGCAAAGTTAGAGGAATCCGAGACGGATTTTGTTGATTTGAAGCAATTGGAGGCTTACTCGCTTGCGGCTATGGTATGTTTGTTGCAACAAGTTAAGCCTAATTTGAGCAAAGGGGATGCTATGTGGTGTCTGCTCATGAGTGATCTTCATGTTGGTCGAGCTAGTGTTATGGATCTTCCGGTTGCTCCTTCACCTAGTAATAATGGGTGTGATAGTATTAATAGTAATCTTGGTGCTGGCAATGAGGAGAATGGTGGTAACGGCTTGGTCGGGGTTGCGCCGCCACCTTTGTGTAAGTTTCACGGGGGTTGGGGTTTCGGCAATGGAGGTACTTCTAAGTTTCCGATGAACGGGTTTCTCTCATACGCATCGGAAATGAGCCTGCAAAGAGAAATTGTGTGTCCAAAGAGGTTTAATCTTACTCCTTCGATGAAGGCTTTATTAAAAAGGAACGTTGCAATGTTTGCCGCCGGTTTTAGAGCCAACTCAAAATAA

Network for GWHGAAZE027828

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0145

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006281	biological_process	DNA repair
GO:0006310	biological_process	DNA recombination
GO:0009379	cellular_component	Holliday junction helicase complex
GO:0005524	molecular_function	ATP binding
GO:0009378	molecular_function	four-way junction helicase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.320
	SRR3591706	second leaf	6.665
	SRR3591707	mature leaf	5.557
	SRR3591708	Shoot apex	7.676
	SRR3591709	Stem	6.169
	SRR3591710	White floral bud	6.542
	SRR3591711	White flower	11.092
	SRR3591712	Green floral bud	7.234
	SRR3591713	Yellow flower	7.887
SRP173429	SRR8316895	Juvenile bud stage	5.628
	SRR8316896	Juvenile bud stage	7.612
	SRR8316897	Juvenile bud stage	4.296
	SRR8316894	Third green stage	2.660
	SRR8316900	Third green stage	9.654
	SRR8316901	Third green stage	7.140
	SRR8316898	Complete white stage	4.300
	SRR8316899	Complete white stage	11.019
	SRR8316903	Complete white stage	7.392
	SRR8316902	Silver flowering stage	4.584
	SRR8316904	Silver flowering stage	9.523
	SRR8316905	Silver flowering stage	3.594
	SRR8316906	Gold flowering stage	14.256
	SRR8316907	Gold flowering stage	15.177
	SRR8316908	Gold flowering stage	19.408
SRP132670	SRR6706286	Control	10.488
	SRR6706287	Light intensity 50%	10.048
	SRR6706288	Light intensity 20%	10.798
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.569
	CNS0095593	Slightly white alabastrum(diploid) 2	2.480
	CNS0095594	Slightly white alabastrum(diploid) 3	2.525
	CNS0095595	Whole white alabastrum(diploid) 2	3.610
	CNS0095596	Whole white alabastrum(diploid) 3	1.965
	CNS0095597	Whole white alabastrum(diploid) 4	2.037
	CNS0095598	Silvery flower (diploied) 1	5.715
	CNS0095599	Silvery flower (diploied) 2	3.128
	CNS0095600	Silvery flower (diploied) 3	13.775
	CNS0095601	Golden flower (diploid) 1	6.914
	CNS0095602	Golden flower (diploid) 2	14.944
	CNS0095603	Golden flower (diploid) 3	14.377
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.066
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.968
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.214
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.148
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.828
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.631
	CNS0095610	Silvery flower (tetraploid) 1	23.803
	CNS0095611	Silvery flower (tetraploid) 2	20.893
	CNS0095612	Silvery flower (tetraploid) 3	10.843
	CNS0095613	Golden flower (tetraploid) 1	7.246
	CNS0095614	Golden flower (tetraploid) 2	18.994
	CNS0095615	Golden flower (tetraploid) 3	10.171
CRA001975	CRR073297	Stem 1	6.728
	CRR073298	Stem 2	6.709
	CRR073299	Stem 3	7.179
	CRR073300	Leaf 1	6.922
	CRR073301	Leaf 2	5.420
	CRR073302	Leaf 3	5.179
	CRR073303	Juvenile bud 1	5.637
	CRR073304	Juvenile bud 2	4.465
	CRR073305	Juvenile bud 3	8.361
	CRR073306	Third green 1	1.550
	CRR073307	Third green 2	1.021
	CRR073308	Third green 3	1.743
	CRR073309	Second white 1	2.874
	CRR073310	Second white 2	2.948
	CRR073311	Second white 3	4.091
	CRR073312	Silver flowering 1	1.668
	CRR073313	Silver flowering 2	4.419
	CRR073314	Silver flowering 3	2.235
	CRR073315	Gold flowering 1	2.740
	CRR073316	Gold flowering 2	6.617
	CRR073317	Gold flowering 3	5.254
	CRR073318	Tawny withering 1	3.906
	CRR073319	Tawny withering 2	2.129
	CRR073320	Tawny withering 3	2.840