Detail information of GWHGAAZE027833


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP12995.12.2361E-99unnamed protein product [Coffea canephora]
Swissprottr|Q8RX22|MIP1_ARATH2E-59MND1-interacting protein 1
trEMBLtr|A0A068UWR5|A0A068UWR5_COFCA8E-100Coffea canephora DH200=94 genomic scaffold, scaffold_72 {ECO:0000313|EMBL:CDP12995.1}
TAIR10AT2G35330.27E-61RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2926023129261900-
GWHAAZE00000008mRNA2926023129261900-
GWHAAZE00000008exon2926023129260938-
GWHAAZE00000008exon2926173029261900-
GWHAAZE00000008CDS2926173029261900-
GWHAAZE00000008CDS2926023129260938-
Transcript Sequence

Network for GWHGAAZE027833

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0145


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.561
SRR3591706second leaf1.698
SRR3591707mature leaf1.709
SRR3591708Shoot apex1.561
SRR3591709Stem1.526
SRR3591710White floral bud1.798
SRR3591711White flower2.607
SRR3591712Green floral bud2.242
SRR3591713Yellow flower1.877
SRP173429 SRR8316895Juvenile bud stage 1.074
SRR8316896Juvenile bud stage 1.100
SRR8316897Juvenile bud stage 0.867
SRR8316894Third green stage 0.807
SRR8316900Third green stage 2.286
SRR8316901Third green stage 2.331
SRR8316898Complete white stage 0.859
SRR8316899Complete white stage 2.990
SRR8316903Complete white stage 1.533
SRR8316902Silver flowering stage0.928
SRR8316904Silver flowering stage1.882
SRR8316905Silver flowering stage0.939
SRR8316906Gold flowering stage 2.941
SRR8316907Gold flowering stage 2.176
SRR8316908Gold flowering stage 3.758
SRP132670SRR6706286Control1.761
SRR6706287Light intensity 50%1.730
SRR6706288Light intensity 20%1.921
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.702
CNS0095593Slightly white alabastrum(diploid) 20.899
CNS0095594Slightly white alabastrum(diploid) 30.391
CNS0095595Whole white alabastrum(diploid) 20.775
CNS0095596Whole white alabastrum(diploid) 30.228
CNS0095597Whole white alabastrum(diploid) 40.385
CNS0095598Silvery flower (diploied) 11.145
CNS0095599Silvery flower (diploied) 21.018
CNS0095600Silvery flower (diploied) 33.096
CNS0095601Golden flower (diploid) 11.212
CNS0095602Golden flower (diploid) 22.127
CNS0095603Golden flower (diploid) 32.905
CNS0095604Slightly white alabastrum(tetraploid) 11.150
CNS0095605Slightly white alabastrum(tetraploid) 21.450
CNS0095606Slightly white alabastrum(tetraploid) 34.017
CNS0095607Whole white alabastrum(tetraploid) 10.454
CNS0095608Whole white alabastrum(tetraploid) 20.832
CNS0095609Whole white alabastrum(tetraploid) 33.683
CNS0095610Silvery flower (tetraploid) 15.607
CNS0095611Silvery flower (tetraploid) 23.526
CNS0095612Silvery flower (tetraploid) 32.911
CNS0095613Golden flower (tetraploid) 11.566
CNS0095614Golden flower (tetraploid) 24.615
CNS0095615Golden flower (tetraploid) 32.245
CRA001975CRR073297Stem 11.834
CRR073298Stem 22.046
CRR073299Stem 32.471
CRR073300Leaf 11.672
CRR073301Leaf 21.352
CRR073302Leaf 31.413
CRR073303Juvenile bud 12.342
CRR073304Juvenile bud 20.757
CRR073305Juvenile bud 32.285
CRR073306Third green 10.352
CRR073307Third green 20.371
CRR073308Third green 30.391
CRR073309Second white 10.934
CRR073310Second white 20.842
CRR073311Second white 30.810
CRR073312Silver flowering 10.330
CRR073313Silver flowering 20.774
CRR073314Silver flowering 30.347
CRR073315Gold flowering 10.782
CRR073316Gold flowering 21.709
CRR073317Gold flowering 31.626
CRR073318Tawny withering 10.999
CRR073319Tawny withering 20.853
CRR073320Tawny withering 30.441