Gene detail

Detail information of GWHGAAZE027839

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006436725.1	hypothetical protein CICLE_v10031568mg [Citrus clementina]
Swissprot	tr\|O23140\|AP2M_ARATH	AP-2 complex subunit mu
trEMBL	tr\|A0A067EB58\|A0A067EB58_CITSI	Uncharacterized protein {ECO:0000313\|EMBL:KDO51120.1}
TAIR10	AT5G46630.1	Clathrin adaptor complexes medium subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	29361647	29381710	+
GWHAAZE00000008	mRNA	29361647	29381710	+
GWHAAZE00000008	exon	29361647	29361729	+
GWHAAZE00000008	exon	29364933	29365110	+
GWHAAZE00000008	exon	29365905	29365995	+
GWHAAZE00000008	exon	29371501	29371595	+
GWHAAZE00000008	exon	29371764	29371938	+
GWHAAZE00000008	exon	29372064	29372202	+
GWHAAZE00000008	exon	29373196	29373336	+
GWHAAZE00000008	exon	29377702	29377792	+
GWHAAZE00000008	exon	29377906	29378048	+
GWHAAZE00000008	exon	29380373	29380487	+
GWHAAZE00000008	exon	29381068	29381112	+
GWHAAZE00000008	exon	29381630	29381710	+
GWHAAZE00000008	CDS	29361647	29361729	+
GWHAAZE00000008	CDS	29364933	29365110	+
GWHAAZE00000008	CDS	29365905	29365995	+
GWHAAZE00000008	CDS	29371501	29371595	+
GWHAAZE00000008	CDS	29371764	29371938	+
GWHAAZE00000008	CDS	29372064	29372202	+
GWHAAZE00000008	CDS	29373196	29373336	+
GWHAAZE00000008	CDS	29377702	29377792	+
GWHAAZE00000008	CDS	29377906	29378048	+
GWHAAZE00000008	CDS	29380373	29380487	+
GWHAAZE00000008	CDS	29381068	29381112	+
GWHAAZE00000008	CDS	29381630	29381710	+

Transcript Sequence
>GWHTAAZE027873 ATGCCGGTGGCTGCTTCGGCTATCTACTTTCTGAATCTCCGCGGTGATGTCCTCATTAATCGCCTCTATCGCGATGACGTTGGGGGAAATATGGTGGATGCCTTCCGAGTGCACATAATGCAAACAAAAGAACTCGGTACATGTCCTGTGCGGCAGATTGGTGGTTGCTCTTTCTTTTACATGAGAATTAGCAATGTCTACATTGTGATTGTTGTCAGCAGCAATGCTAATGTAGCCTGTGCCTTCAAGTTTGTTGTTGAGGCAGTTGCCTTATTCAAATCTTATTTTGGTGGGGCTTTTGATGAGGATGCTATTCGGAATAATTTTGTTTTGATCTACGAGCTGTTGGATGAGATCATGGATTTTGGTTATCCTCAAAACCTTTCGCCAGAAATTTTGAAGCTTTACATAACTCAAGAAGGTGTACGCTCACCATTTTCATCTAAGCCTACAGATAAACCTGTCCCCAATGCAACTTTACAAGTCACTGGCGCTGTAGGATGGCGTAGGGAGGGCCTTGTCTATAAAAAGAATGAGGTTGCCCTTTTCTCTTTGCCCTTACCTATATCACTTGGTGCAGATATTGCAATTCTTCTCAATTATAATGTTTGTTCGTCAACAGGTAGTGTACTGCGCTGTGATGTAACTGGTAAGATTCTCATGAAGTGCTTCCTTTCTGGGATGCCTGATTTGAAGTTGGGGTTAAATGACAAAATTGGCCTCGAGAAAGAGTCACAGATTAAGTCCCGTCCTACCAAGAGTTTTCAACTATTCTATCTCATGCAGCGGAAAACTATTGAACTCGATGATGTTACTTTCCATCAATGTGTAAATTTGACAAGATTTAACTCAGAGAAGACTGTCAGCTTTGTGCCACCTGATGGTGAATTTGAATTGATGAAGTACCGTATTACTGAGGGTGTGAATCTTCCATTCCGAGTATTGCCCACTATCAAGGAATTGGGCCGGACTCGCATGGAAGTAAATGTTAAGGTAAAGAGCGTCTTTGGTGCCAAAATGTTTGCCCTTGGAGTTGTGATCAAGATTCCAGTTCCAAAACAAACAGCAAAAACAAGTTTCCAAGTGACATCAGGTCGAGCAAAATACAATGCGTCCATTGACTGCTTGGTCTGGAAGATAAGAAAATTTCCGGGACAAACTGAACCAACCTTGAGTGCTGAAGTAGAGCTAATTTCCACAATTGCAGAGAAGAAGTCTTGGACTCGCCCACCTATTCAGATGGAATTTCAGGTTCCAATGTTCACGGCGTCTGGACTACGTGTCCGTTTTCTCAAGGTATGGGAGAAAAGCGGGTACAATACAGTTGAGTGGGTCCGTTACATTACCAAAGCCGGTTCTTATGAGATCAGATGCTAG

Network for GWHGAAZE027839

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00928.22	Adap_comp_sub	203	458	4.90E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11826	AP2M1	Endocytosis	map04144
		Endocrine and other factor-regulated calcium reabsorption	map04961
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0030131	cellular_component	clathrin adaptor complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	92.390
	SRR3591706	second leaf	48.612
	SRR3591707	mature leaf	36.878
	SRR3591708	Shoot apex	60.128
	SRR3591709	Stem	74.790
	SRR3591710	White floral bud	65.920
	SRR3591711	White flower	72.152
	SRR3591712	Green floral bud	68.548
	SRR3591713	Yellow flower	73.885
SRP173429	SRR8316895	Juvenile bud stage	37.712
	SRR8316896	Juvenile bud stage	52.700
	SRR8316897	Juvenile bud stage	26.401
	SRR8316894	Third green stage	21.743
	SRR8316900	Third green stage	63.796
	SRR8316901	Third green stage	61.914
	SRR8316898	Complete white stage	35.431
	SRR8316899	Complete white stage	99.215
	SRR8316903	Complete white stage	51.658
	SRR8316902	Silver flowering stage	38.718
	SRR8316904	Silver flowering stage	54.297
	SRR8316905	Silver flowering stage	25.626
	SRR8316906	Gold flowering stage	75.305
	SRR8316907	Gold flowering stage	68.571
	SRR8316908	Gold flowering stage	73.861
SRP132670	SRR6706286	Control	37.394
	SRR6706287	Light intensity 50%	46.436
	SRR6706288	Light intensity 20%	46.875
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.564
	CNS0095593	Slightly white alabastrum(diploid) 2	40.969
	CNS0095594	Slightly white alabastrum(diploid) 3	36.102
	CNS0095595	Whole white alabastrum(diploid) 2	37.803
	CNS0095596	Whole white alabastrum(diploid) 3	36.569
	CNS0095597	Whole white alabastrum(diploid) 4	34.111
	CNS0095598	Silvery flower (diploied) 1	39.520
	CNS0095599	Silvery flower (diploied) 2	29.365
	CNS0095600	Silvery flower (diploied) 3	71.343
	CNS0095601	Golden flower (diploid) 1	30.681
	CNS0095602	Golden flower (diploid) 2	67.852
	CNS0095603	Golden flower (diploid) 3	60.659
	CNS0095604	Slightly white alabastrum(tetraploid) 1	49.466
	CNS0095605	Slightly white alabastrum(tetraploid) 2	47.600
	CNS0095606	Slightly white alabastrum(tetraploid) 3	87.058
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.977
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.935
	CNS0095609	Whole white alabastrum(tetraploid) 3	63.292
	CNS0095610	Silvery flower (tetraploid) 1	72.884
	CNS0095611	Silvery flower (tetraploid) 2	66.534
	CNS0095612	Silvery flower (tetraploid) 3	68.935
	CNS0095613	Golden flower (tetraploid) 1	53.256
	CNS0095614	Golden flower (tetraploid) 2	68.483
	CNS0095615	Golden flower (tetraploid) 3	67.731
CRA001975	CRR073297	Stem 1	52.622
	CRR073298	Stem 2	51.266
	CRR073299	Stem 3	50.654
	CRR073300	Leaf 1	63.440
	CRR073301	Leaf 2	52.114
	CRR073302	Leaf 3	57.807
	CRR073303	Juvenile bud 1	69.686
	CRR073304	Juvenile bud 2	62.468
	CRR073305	Juvenile bud 3	65.591
	CRR073306	Third green 1	60.880
	CRR073307	Third green 2	59.249
	CRR073308	Third green 3	65.491
	CRR073309	Second white 1	66.011
	CRR073310	Second white 2	57.045
	CRR073311	Second white 3	52.523
	CRR073312	Silver flowering 1	51.158
	CRR073313	Silver flowering 2	48.372
	CRR073314	Silver flowering 3	38.372
	CRR073315	Gold flowering 1	34.825
	CRR073316	Gold flowering 2	48.550
	CRR073317	Gold flowering 3	36.786
	CRR073318	Tawny withering 1	67.759
	CRR073319	Tawny withering 2	59.062
	CRR073320	Tawny withering 3	87.180