Gene detail

Detail information of GWHGAAZE027846

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN64336.1	7.68784E-47	hypothetical protein VITISV_001809 [Vitis vinifera]
Swissprot	tr\|Q9SGH2\|MBD9_ARATH	0.000002	Methyl-CpG-binding domain-containing protein 9
trEMBL	tr\|A0A068UX64\|A0A068UX64_COFCA	2E-56	Coffea canephora DH200=94 genomic scaffold, scaffold_72 {ECO:0000313\|EMBL:CDP13021.1}
TAIR10	AT3G02890.1	2E-23	RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	29952333	29956887	+
GWHAAZE00000008	mRNA	29952333	29956887	+
GWHAAZE00000008	exon	29952333	29952395	+
GWHAAZE00000008	exon	29952630	29952715	+
GWHAAZE00000008	exon	29953060	29953424	+
GWHAAZE00000008	exon	29954161	29954682	+
GWHAAZE00000008	exon	29955250	29955712	+
GWHAAZE00000008	exon	29956638	29956887	+
GWHAAZE00000008	CDS	29952333	29952395	+
GWHAAZE00000008	CDS	29952630	29952715	+
GWHAAZE00000008	CDS	29953060	29953424	+
GWHAAZE00000008	CDS	29954161	29954682	+
GWHAAZE00000008	CDS	29955250	29955712	+
GWHAAZE00000008	CDS	29956638	29956887	+

Transcript Sequence
>GWHTAAZE027880 ATGCAAGGAAAACCCAACCTAATTAGGTCTCTCACCTTTTTATTATATGCTGTTGTAATCTTGGTAAAAGTTTGTGATATCTGTGGGGATGCTGGTCGCGAGGACTTGCTTGCTATTTGTAGCAAGTGCGCTGATGGGGCAGAGCATATTTATTGCATGCACATTAAGCTGGAGAAAGTTCCTGAAGGGAATTGGATGTGCGAAGAATGCATGTCTTCAGAAGGAATTGAGAAACGTAAACAAAGTATGCTCGAATCAGCGATTGGAAGTTTAAACTTTCCGAATGAAATATGTCGGAATGCTGGTACTTCAAGCACTGCCAATACTAGGACTTGTTTGGATATCAATGGCTCCAATGTTAAGAAAATCAGAAGAGACAATGTTAGCTCAGTTCCCCAATTTTCTGCTAAGAGACATGCAGGTGCTTTAGATTCTGCCGTAGCAAAGAAAAGAATGGTTGTTCAAACAAGTGTTGAATCACCTAGATTTTCGTCCAATAACCCCCCCTTCGATGGTACTCTATCCAAGTCCAAGTCATTCAATTTTTCAAACTTGAAATGTGAAGTCCAATCACAGGAGCAACCTGAAAAGAACAAAAGTTGTAGAGAAACTTCTATCATTGATAAGAAAACGGAAGGTGCAATCAGAAAGATTAACAAATCTGTGTCATTTGACAATATCAGCTCTCGCCATCGGAATGTAGGTCAATCGAAAGTTAAGATGTTGATATCTCCTAGTAGTTCTCGTGTTCATGATTTGAAGAGTTTAAAAAGTGCAAAAGGAAGTAGTTCAATTCAAAATAAGCATATATCCAAATCAGATAAGCCAATGGTTACTTCACCAGTGACCGGTTCTTGTACTTCCCCATCTAAAAATGGGAAAATGGTTTCAAGTAATAGTCAACCTACCGAAGTGCATTCTTCTGGAAACAAAAATCTCAATCCGAAGCTTTCTCGACATTTTGTAAATTCAAGTCACTCATCAAAACCATCTCGTCATATGGCTCATGAAGTCTCCAAATGTCGTGAAGATTCTGCTGTTGCTAGCGGGGTAAAGAGGCTGCACTCATCTCTCTCAGATGTGGCTCGAAAGCCTTCTCCCGTTATATCTGATTCATCTCACGAGAAAAGGCCTAAGGGCACACTCAGATCTAATTCTTTTCCAGCAAATAGTAGACGTGAAAATACTGGTGCAACTGTGCAAGTTATATTTTCCCAGTCACGAGAATTTTCCAATCAAGTTGAGGAAGCACATGAAGGCTCTAATTTCAGCACCACTAGTGAGCAAATCAAAGCTGGAAGTCAACCGGGTCACAAATTTAAGGATACAGTAAATGCTGTTGAATCTGGCAGAATAATTAGTCCTCGGACTAAAGTTCCTGAGGGAGGAGAAAGAGAGGACGTGGACCAAAGTAACCCCAAGGATCTTGGCCCGAACAGTTTCCATCATCCTGATGCGTCCAGGAATTTTGCATTTCCAAGCTTTGATTTTATATGGAAAGGTGGATTTGAAATGGTGAGGTGGGAAAGACTCCCTGGTTTCACAAGCAGCATTCAAGCCCACTTATCTACTCGGGTGTCGCCAAAAGCTCTTGAAGTTGTGAAGAAGTTTCCTTGCAACATTCTTCTGGAGGAAGTATCTCGCTCGAGTACATGGCCAACTCAGTTCAAGCAAAGTGAACCCAGTGAAAACAACGTTGCGCTTTACTTCTTTGCAGAAGATTTCGAGAGGTTTGATGCGTACATTTAA

Network for GWHGAAZE027846

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00628.30	PHD	24	72	3.50E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.789
	SRR3591706	second leaf	9.234
	SRR3591707	mature leaf	18.399
	SRR3591708	Shoot apex	11.073
	SRR3591709	Stem	18.719
	SRR3591710	White floral bud	34.410
	SRR3591711	White flower	53.839
	SRR3591712	Green floral bud	22.415
	SRR3591713	Yellow flower	110.289
SRP173429	SRR8316895	Juvenile bud stage	12.133
	SRR8316896	Juvenile bud stage	16.475
	SRR8316897	Juvenile bud stage	6.436
	SRR8316894	Third green stage	5.665
	SRR8316900	Third green stage	9.732
	SRR8316901	Third green stage	10.662
	SRR8316898	Complete white stage	9.032
	SRR8316899	Complete white stage	18.671
	SRR8316903	Complete white stage	18.509
	SRR8316902	Silver flowering stage	18.839
	SRR8316904	Silver flowering stage	34.177
	SRR8316905	Silver flowering stage	17.631
	SRR8316906	Gold flowering stage	69.810
	SRR8316907	Gold flowering stage	49.655
	SRR8316908	Gold flowering stage	54.435
SRP132670	SRR6706286	Control	9.436
	SRR6706287	Light intensity 50%	10.371
	SRR6706288	Light intensity 20%	9.453
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.097
	CNS0095593	Slightly white alabastrum(diploid) 2	5.394
	CNS0095594	Slightly white alabastrum(diploid) 3	7.267
	CNS0095595	Whole white alabastrum(diploid) 2	5.836
	CNS0095596	Whole white alabastrum(diploid) 3	4.751
	CNS0095597	Whole white alabastrum(diploid) 4	7.255
	CNS0095598	Silvery flower (diploied) 1	13.440
	CNS0095599	Silvery flower (diploied) 2	10.832
	CNS0095600	Silvery flower (diploied) 3	45.639
	CNS0095601	Golden flower (diploid) 1	14.630
	CNS0095602	Golden flower (diploid) 2	69.270
	CNS0095603	Golden flower (diploid) 3	63.587
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.922
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.073
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.471
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.509
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.915
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.636
	CNS0095610	Silvery flower (tetraploid) 1	59.204
	CNS0095611	Silvery flower (tetraploid) 2	56.241
	CNS0095612	Silvery flower (tetraploid) 3	44.171
	CNS0095613	Golden flower (tetraploid) 1	39.894
	CNS0095614	Golden flower (tetraploid) 2	59.301
	CNS0095615	Golden flower (tetraploid) 3	133.646
CRA001975	CRR073297	Stem 1	18.447
	CRR073298	Stem 2	14.440
	CRR073299	Stem 3	14.164
	CRR073300	Leaf 1	11.771
	CRR073301	Leaf 2	9.571
	CRR073302	Leaf 3	7.743
	CRR073303	Juvenile bud 1	7.974
	CRR073304	Juvenile bud 2	11.916
	CRR073305	Juvenile bud 3	8.789
	CRR073306	Third green 1	7.110
	CRR073307	Third green 2	8.314
	CRR073308	Third green 3	9.461
	CRR073309	Second white 1	10.163
	CRR073310	Second white 2	17.553
	CRR073311	Second white 3	14.637
	CRR073312	Silver flowering 1	17.893
	CRR073313	Silver flowering 2	13.631
	CRR073314	Silver flowering 3	22.215
	CRR073315	Gold flowering 1	7.241
	CRR073316	Gold flowering 2	13.663
	CRR073317	Gold flowering 3	5.402
	CRR073318	Tawny withering 1	16.437
	CRR073319	Tawny withering 2	15.391
	CRR073320	Tawny withering 3	12.061