Gene detail

Detail information of GWHGAAZE027847

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010275212.1	4.932E-176	PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Nelumbo nucifera]
Swissprot	tr\|Q93XM7\|MCAT_ARATH	1E-165	Mitochondrial carnitine/acylcarnitine carrier-like protein
trEMBL	tr\|I1J4W1\|I1J4W1_SOYBN	9E-172	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G02300.1}
TAIR10	AT5G46800.1	1E-115	Mitochondrial substrate carrier family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	29986861	29989433	+
GWHAAZE00000008	mRNA	29986861	29989433	+
GWHAAZE00000008	exon	29986861	29987237	+
GWHAAZE00000008	exon	29988875	29989433	+
GWHAAZE00000008	CDS	29986861	29987237	+
GWHAAZE00000008	CDS	29988875	29989433	+

Transcript Sequence
>GWHTAAZE027881 CAAGGACTTAACTTCTGGGACAGTAGGAGGGCAGCCCAATTGATAGTAGGGCACCCTTTTGATACCATCAAGGTCAAGCTCCAAAGTCAACCTACCCCACTACCTGGCCAGTTGCCAAAATACTCGGGTGCAATCGATGCTGTCAAACAAACAATAGCAGCTGAAGGGCCAAGGGGCCTTTACAAAGGAATGGGGGCACCACTTGCCACTGTGGCGGCCTTCAATGCCCTCCTCTTCTCTGTGAGGGGACAAATGGAGGTGCTGTTGAGGTCCCAACCTGGTGCACCACTTACGGTGAACCAGCAGATCGTGGCTGGAGCTGGGGCTGGAGTTGCTGTCTCCTTTTTGGCCTGCCCAACTGAATTGATCAAGTGCAGATTGCAAGCACAGAGTGCAATGGCTGGTGCTGAATCAGTTGCAACTTCAGCCGCGATGTCAGCTACCACATCAGCAGCAGCGTCAGCTGCTACATCAGCCGCCACACCAGTGAAGTACAGCGGCCCCATGGACGTGGCTCGCCACGTCATCCGATCAGCGGGAGTAAAGGGCCTCTTCAAGGGTTTGGTCCCCACTATGGCCCGAGAAATACCGGGAAACGCAGCCATGTTTGGTGCCTATGAAGCTTTTAAGCAATACCTCGCCGGAGGAACGGATACCTCCGGGCTTGGAAGAGGGTCTCTGATAGCTGCTGGAGGACTTGCCGGAGCTTCTTTTTGGGTCTCCGTTTACCCCACTGATGTTGTGAAGAGCGTGATCCAAGTGGACGATTACAAGAATCCTAAGTACAAAGGCTCGATTGATGCTTTCAAAAAGATAGTGGCATCGGAGGGTGTGAAGGGACTCTACAAGGGGTTCGGGCCCGCCATGGCTCGGAGTGTGCCCGCAAATGCTGCATGTTTCTTGGCTTATGAGGTTACAAGGTCTAGCTTGGGATGA

Network for GWHGAAZE027847

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00153.28	Mito_carr	11	89	9.50E-13
PF00153.28	Mito_carr	98	214	4.40E-21
PF00153.28	Mito_carr	228	309	2.70E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15109	SLC25A20_29, CACT, CACL, CRC1	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	63.635
	SRR3591706	second leaf	224.260
	SRR3591707	mature leaf	147.209
	SRR3591708	Shoot apex	86.575
	SRR3591709	Stem	77.000
	SRR3591710	White floral bud	18.632
	SRR3591711	White flower	12.673
	SRR3591712	Green floral bud	44.565
	SRR3591713	Yellow flower	7.185
SRP173429	SRR8316895	Juvenile bud stage	30.952
	SRR8316896	Juvenile bud stage	28.439
	SRR8316897	Juvenile bud stage	18.629
	SRR8316894	Third green stage	12.577
	SRR8316900	Third green stage	34.472
	SRR8316901	Third green stage	38.079
	SRR8316898	Complete white stage	3.844
	SRR8316899	Complete white stage	30.215
	SRR8316903	Complete white stage	5.885
	SRR8316902	Silver flowering stage	1.807
	SRR8316904	Silver flowering stage	1.822
	SRR8316905	Silver flowering stage	0.967
	SRR8316906	Gold flowering stage	3.024
	SRR8316907	Gold flowering stage	2.595
	SRR8316908	Gold flowering stage	4.216
SRP132670	SRR6706286	Control	46.770
	SRR6706287	Light intensity 50%	43.679
	SRR6706288	Light intensity 20%	49.811
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.477
	CNS0095593	Slightly white alabastrum(diploid) 2	32.389
	CNS0095594	Slightly white alabastrum(diploid) 3	27.922
	CNS0095595	Whole white alabastrum(diploid) 2	34.533
	CNS0095596	Whole white alabastrum(diploid) 3	37.333
	CNS0095597	Whole white alabastrum(diploid) 4	29.073
	CNS0095598	Silvery flower (diploied) 1	36.296
	CNS0095599	Silvery flower (diploied) 2	29.571
	CNS0095600	Silvery flower (diploied) 3	15.860
	CNS0095601	Golden flower (diploid) 1	20.219
	CNS0095602	Golden flower (diploid) 2	19.888
	CNS0095603	Golden flower (diploid) 3	19.794
	CNS0095604	Slightly white alabastrum(tetraploid) 1	74.053
	CNS0095605	Slightly white alabastrum(tetraploid) 2	65.105
	CNS0095606	Slightly white alabastrum(tetraploid) 3	105.233
	CNS0095607	Whole white alabastrum(tetraploid) 1	42.504
	CNS0095608	Whole white alabastrum(tetraploid) 2	32.330
	CNS0095609	Whole white alabastrum(tetraploid) 3	85.793
	CNS0095610	Silvery flower (tetraploid) 1	22.375
	CNS0095611	Silvery flower (tetraploid) 2	26.080
	CNS0095612	Silvery flower (tetraploid) 3	11.585
	CNS0095613	Golden flower (tetraploid) 1	8.789
	CNS0095614	Golden flower (tetraploid) 2	21.718
	CNS0095615	Golden flower (tetraploid) 3	3.737
CRA001975	CRR073297	Stem 1	49.443
	CRR073298	Stem 2	45.944
	CRR073299	Stem 3	65.865
	CRR073300	Leaf 1	37.267
	CRR073301	Leaf 2	39.483
	CRR073302	Leaf 3	51.386
	CRR073303	Juvenile bud 1	34.520
	CRR073304	Juvenile bud 2	31.983
	CRR073305	Juvenile bud 3	29.414
	CRR073306	Third green 1	2.184
	CRR073307	Third green 2	2.407
	CRR073308	Third green 3	2.984
	CRR073309	Second white 1	2.156
	CRR073310	Second white 2	1.827
	CRR073311	Second white 3	2.198
	CRR073312	Silver flowering 1	1.626
	CRR073313	Silver flowering 2	3.337
	CRR073314	Silver flowering 3	2.250
	CRR073315	Gold flowering 1	264.981
	CRR073316	Gold flowering 2	317.742
	CRR073317	Gold flowering 3	304.586
	CRR073318	Tawny withering 1	39.687
	CRR073319	Tawny withering 2	33.256
	CRR073320	Tawny withering 3	50.988