Detail information of GWHGAAZE027856


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008465985.11.0648E-118PREDICTED: E3 ubiquitin-protein ligase Os04g0590900-like [Cucumis melo]
Swissprottr|Q7XLY8|ATL41_ORYSJ3E-68E3 ubiquitin-protein ligase Os04g0590900
trEMBLtr|A0A0A0LH71|A0A0A0LH71_CUCSA1E-115Uncharacterized protein {ECO:0000313|EMBL:KGN60374.1}
TAIR10AT5G17600.14E-57RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene3033654030337493+
GWHAAZE00000008mRNA3033654030337493+
GWHAAZE00000008exon3033654030337493+
GWHAAZE00000008CDS3033654030337493+
Transcript Sequence

Network for GWHGAAZE027856

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21451882.30E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.302
SRR3591706second leaf13.405
SRR3591707mature leaf12.327
SRR3591708Shoot apex16.563
SRR3591709Stem5.468
SRR3591710White floral bud2.796
SRR3591711White flower6.031
SRR3591712Green floral bud7.778
SRR3591713Yellow flower2.548
SRP173429 SRR8316895Juvenile bud stage 2.569
SRR8316896Juvenile bud stage 2.944
SRR8316897Juvenile bud stage 1.246
SRR8316894Third green stage 2.120
SRR8316900Third green stage 4.241
SRR8316901Third green stage 3.561
SRR8316898Complete white stage 1.393
SRR8316899Complete white stage 6.951
SRR8316903Complete white stage 2.918
SRR8316902Silver flowering stage1.171
SRR8316904Silver flowering stage1.577
SRR8316905Silver flowering stage0.466
SRR8316906Gold flowering stage 2.628
SRR8316907Gold flowering stage 1.853
SRR8316908Gold flowering stage 1.784
SRP132670SRR6706286Control1.226
SRR6706287Light intensity 50%1.981
SRR6706288Light intensity 20%1.700
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.235
CNS0095593Slightly white alabastrum(diploid) 25.059
CNS0095594Slightly white alabastrum(diploid) 35.669
CNS0095595Whole white alabastrum(diploid) 22.254
CNS0095596Whole white alabastrum(diploid) 32.887
CNS0095597Whole white alabastrum(diploid) 44.106
CNS0095598Silvery flower (diploied) 13.097
CNS0095599Silvery flower (diploied) 21.990
CNS0095600Silvery flower (diploied) 33.541
CNS0095601Golden flower (diploid) 14.074
CNS0095602Golden flower (diploid) 22.449
CNS0095603Golden flower (diploid) 33.074
CNS0095604Slightly white alabastrum(tetraploid) 15.949
CNS0095605Slightly white alabastrum(tetraploid) 24.990
CNS0095606Slightly white alabastrum(tetraploid) 312.404
CNS0095607Whole white alabastrum(tetraploid) 14.744
CNS0095608Whole white alabastrum(tetraploid) 23.495
CNS0095609Whole white alabastrum(tetraploid) 34.116
CNS0095610Silvery flower (tetraploid) 14.812
CNS0095611Silvery flower (tetraploid) 22.360
CNS0095612Silvery flower (tetraploid) 31.115
CNS0095613Golden flower (tetraploid) 11.351
CNS0095614Golden flower (tetraploid) 22.285
CNS0095615Golden flower (tetraploid) 31.607
CRA001975CRR073297Stem 14.293
CRR073298Stem 24.032
CRR073299Stem 32.424
CRR073300Leaf 12.683
CRR073301Leaf 23.819
CRR073302Leaf 31.086
CRR073303Juvenile bud 11.059
CRR073304Juvenile bud 20.187
CRR073305Juvenile bud 31.114
CRR073306Third green 10.259
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.604
CRR073311Second white 30.748
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.106
CRR073315Gold flowering 13.123
CRR073316Gold flowering 22.518
CRR073317Gold flowering 30.350
CRR073318Tawny withering 11.560
CRR073319Tawny withering 20.968
CRR073320Tawny withering 31.282