Detail information of GWHGAAZE027860


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrEPS65626.19.29543E-54hypothetical protein M569_09152, partial [Genlisea aurea]
Swissprottr|O49691|ATL29_ARATH1E-48RING-H2 finger protein ATL29
trEMBLtr|S8CLH4|S8CLH4_9LAMI3E-54Uncharacterized protein {ECO:0000313|EMBL:EPS65626.1} (Fragment)
TAIR10AT4G17920.17E-29RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene3039203930392527-
GWHAAZE00000008mRNA3039203930392527-
GWHAAZE00000008exon3039203930392527-
GWHAAZE00000008CDS3039203930392527-
Transcript Sequence

Network for GWHGAAZE027860

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21061495.70E-15
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.313
SRR3591711White flower0.000
SRR3591712Green floral bud12.200
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 2.829
SRR8316896Juvenile bud stage 8.659
SRR8316897Juvenile bud stage 3.590
SRR8316894Third green stage 3.821
SRR8316900Third green stage 15.287
SRR8316901Third green stage 14.461
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.150
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control6.754
SRR6706287Light intensity 50%6.641
SRR6706288Light intensity 20%5.646
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.288
CNS0095593Slightly white alabastrum(diploid) 26.972
CNS0095594Slightly white alabastrum(diploid) 311.597
CNS0095595Whole white alabastrum(diploid) 210.781
CNS0095596Whole white alabastrum(diploid) 317.676
CNS0095597Whole white alabastrum(diploid) 413.463
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 113.914
CNS0095605Slightly white alabastrum(tetraploid) 217.686
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 123.857
CNS0095608Whole white alabastrum(tetraploid) 228.673
CNS0095609Whole white alabastrum(tetraploid) 313.465
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.126
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.127
CRA001975CRR073297Stem 15.594
CRR073298Stem 23.981
CRR073299Stem 32.733
CRR073300Leaf 112.680
CRR073301Leaf 210.586
CRR073302Leaf 38.099
CRR073303Juvenile bud 19.544
CRR073304Juvenile bud 23.501
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.106
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000