Gene detail

Detail information of GWHGAAZE027864

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010246312.1	PREDICTED: light-mediated development protein DET1 isoform X1 [Nelumbo nucifera]
Swissprot	tr\|Q9ZNU6\|DET1_SOLLC	Light-mediated development protein DET1
trEMBL	tr\|Q8RWP9\|Q8RWP9_SOLTU	Deetiolated 1-like protein {ECO:0000313\|EMBL:AAM18188.2}
TAIR10	AT4G10180.1	light-mediated development protein 1 / deetiolated1 (DET1)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	30457463	30466400	+
GWHAAZE00000008	mRNA	30457463	30466400	+
GWHAAZE00000008	exon	30457463	30457689	+
GWHAAZE00000008	exon	30458488	30458918	+
GWHAAZE00000008	exon	30459515	30459750	+
GWHAAZE00000008	exon	30459987	30460045	+
GWHAAZE00000008	exon	30461468	30461644	+
GWHAAZE00000008	exon	30463512	30463580	+
GWHAAZE00000008	exon	30463687	30463743	+
GWHAAZE00000008	exon	30463963	30464043	+
GWHAAZE00000008	exon	30464416	30464580	+
GWHAAZE00000008	exon	30464660	30464755	+
GWHAAZE00000008	exon	30465391	30465490	+
GWHAAZE00000008	exon	30466261	30466400	+
GWHAAZE00000008	five_prime_UTR	30457463	30457617	+
GWHAAZE00000008	CDS	30457618	30457689	+
GWHAAZE00000008	CDS	30458488	30458918	+
GWHAAZE00000008	CDS	30459515	30459750	+
GWHAAZE00000008	CDS	30459987	30460045	+
GWHAAZE00000008	CDS	30461468	30461644	+
GWHAAZE00000008	CDS	30463512	30463580	+
GWHAAZE00000008	CDS	30463687	30463743	+
GWHAAZE00000008	CDS	30463963	30464043	+
GWHAAZE00000008	CDS	30464416	30464580	+
GWHAAZE00000008	CDS	30464660	30464755	+
GWHAAZE00000008	CDS	30465391	30465490	+
GWHAAZE00000008	CDS	30466261	30466400	+

Transcript Sequence
>GWHTAAZE027898 ATTTTTATTTGTTCCTTCTTGCAGATTTTGCAGCATATGGTCGTCACTACTTTTTTGACATTATAATAGTTTATTTGCATAAAACGCATCTCTACTGATACCACATGGTGCCCCACAGAGGAAAATAGATTAAAAAAAATTGCGAGCAACCACTGATGTTTAAAAGCAACAATGTCACTGCCAGGATTTTTGAGCGCCAGATTCGCACTCCTGCTCCTGGTACCAGTGTTCATTGTGCCAGACGATTTTACGAGAATGTAGTTCCAAGTTTTACCTTATACGATGTAGAATGTCCTGATCATTCATTCCGTAAATTCACCGATGACGGTCAATACCTCATTAGTTTCAGCAGAAATCACCAGGATCTTATAGTATATAGACCATCGTGGTTGTCATTTTCATGCAAAGAAGAAAATTGTGATGATACTCACGAGCTTCCCTTGAAATCCAAGAAATTTGAGAGCTTCTTCACTCAACTATACTCTGTGACACTTGCTTCTAGAAGTGAGCTTATATGCAAAGACTTTTTCCTCTATATAGAGAGTAATCGATTTGGACTTTTTGCAACCTCAACTGCACAAATTCATGATGCCCCTGCAATTGGAGGAGCTGTTCCTGGTGTCCCTTCGATTGAGAAAATAACATTTCATCTTTTAAGATTGGAAGATGGAGTTGTACTTGATGAGAGGGTTTTCCGCAATGATTATGTTAATTTGGCACACAACATGGGTGTGTTCTTATATGATGATTTACTGGCTTTAGTGTCCCTCCGGTATCAACGGATACACATTCTCCAAATTAGGGACTCGGGGAACCTTGTTGATGTTCGGGCAATTGGGGAATTTTGCTGTGAAGATGATGAGCTTTTTCTCAATTCCAATGCGCAGGCAAGTGGTTGTTTGAGCTCAGTCAACTTAGTCAACTTCCCAGATGACGTGGTAGCTTCATGGGTGCGCATGGCAGTCCCTGACAAAAGTAATAAACTGCAGCAGGTGCCCGTGAATAATGTTGGGAATGGTGTTCATCATCATCAGCCTGTTCCAGACAATTTGTTCTTGAGTGGTATTAAACAGCGTTTACTTTCATTCATATTCCGAGGGATATGGAAGGAAGAAACTGATCATACCCTGAGAATCCAAAGCCTGAAGAGGAATTTTTATTTCCACTTTCAGGATTATATCGATTTGATTATCTGGAAGGTACAATTCTTGGACCGACATCACCTACTAATCAAGTTTGGCAGTGTTGATGGAGGGGTATCGAGAAATGCTGATAGCCATCCTTCATTCTTTGCTGTATATAACATGGAGACAACCGAAATTATAGCGTTTTATCAGATAACAACGGACGAGCTTTATTTCTTGCTTGAACAGTTCTGTGACCATTTCCACATAGCATCGAAAAATTCATTGTACATGAATTTTATATCATCTCACTCAAATAACATTCATGCTCTTGAGCAACTTAAGTGCGGTAAAAATAAAGCCACTAGCTTCTCTCAGTTTGTGAAGAAGATGCTGGCCTCTTTGCCTTTTAGTTGTCAGTCACAGAGTCCCTCTCCTTATTTTGACCAGTCCCTCTTTCGATTTGATGAGAAGTTAATTTCAGCAACAGACCGACATAGGCAATCGACGGACCATCCCATCAAGTTCATTTCAAGGCGCCAACCAAATTCCCTCAAATTCAAAATCAAACCAGGACCGGAAGCCGGAAGTACCGATGGAAGGACAAAGAAGATATCTTCATTCCTCTTCCATCCAACTTTGCCACTTGCACTCTCTGTTCAACAGACCCTCTTCTTGCAGCCCTGTGTTGTTAATATTCACTTCCGCAGATAA

Network for GWHGAAZE027864

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09737.10	Det1	122	560	1.40E-149

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10571	DET1	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.426
	SRR3591706	second leaf	29.201
	SRR3591707	mature leaf	30.994
	SRR3591708	Shoot apex	27.564
	SRR3591709	Stem	18.984
	SRR3591710	White floral bud	13.412
	SRR3591711	White flower	16.188
	SRR3591712	Green floral bud	15.646
	SRR3591713	Yellow flower	9.988
SRP173429	SRR8316895	Juvenile bud stage	8.389
	SRR8316896	Juvenile bud stage	11.457
	SRR8316897	Juvenile bud stage	6.813
	SRR8316894	Third green stage	5.651
	SRR8316900	Third green stage	12.108
	SRR8316901	Third green stage	11.597
	SRR8316898	Complete white stage	5.261
	SRR8316899	Complete white stage	15.531
	SRR8316903	Complete white stage	8.717
	SRR8316902	Silver flowering stage	4.958
	SRR8316904	Silver flowering stage	9.297
	SRR8316905	Silver flowering stage	3.394
	SRR8316906	Gold flowering stage	11.826
	SRR8316907	Gold flowering stage	12.074
	SRR8316908	Gold flowering stage	9.181
SRP132670	SRR6706286	Control	11.005
	SRR6706287	Light intensity 50%	8.814
	SRR6706288	Light intensity 20%	9.490
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.006
	CNS0095593	Slightly white alabastrum(diploid) 2	8.608
	CNS0095594	Slightly white alabastrum(diploid) 3	7.541
	CNS0095595	Whole white alabastrum(diploid) 2	7.370
	CNS0095596	Whole white alabastrum(diploid) 3	6.992
	CNS0095597	Whole white alabastrum(diploid) 4	7.236
	CNS0095598	Silvery flower (diploied) 1	13.250
	CNS0095599	Silvery flower (diploied) 2	10.892
	CNS0095600	Silvery flower (diploied) 3	14.912
	CNS0095601	Golden flower (diploid) 1	12.712
	CNS0095602	Golden flower (diploid) 2	16.431
	CNS0095603	Golden flower (diploid) 3	15.521
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.152
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.569
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.461
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.174
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.443
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.512
	CNS0095610	Silvery flower (tetraploid) 1	11.578
	CNS0095611	Silvery flower (tetraploid) 2	15.405
	CNS0095612	Silvery flower (tetraploid) 3	7.753
	CNS0095613	Golden flower (tetraploid) 1	5.760
	CNS0095614	Golden flower (tetraploid) 2	9.976
	CNS0095615	Golden flower (tetraploid) 3	7.195
CRA001975	CRR073297	Stem 1	10.064
	CRR073298	Stem 2	9.269
	CRR073299	Stem 3	8.392
	CRR073300	Leaf 1	9.835
	CRR073301	Leaf 2	7.128
	CRR073302	Leaf 3	7.280
	CRR073303	Juvenile bud 1	6.509
	CRR073304	Juvenile bud 2	4.817
	CRR073305	Juvenile bud 3	7.616
	CRR073306	Third green 1	2.715
	CRR073307	Third green 2	2.952
	CRR073308	Third green 3	3.249
	CRR073309	Second white 1	2.040
	CRR073310	Second white 2	4.239
	CRR073311	Second white 3	1.401
	CRR073312	Silver flowering 1	1.870
	CRR073313	Silver flowering 2	0.831
	CRR073314	Silver flowering 3	1.862
	CRR073315	Gold flowering 1	7.073
	CRR073316	Gold flowering 2	11.794
	CRR073317	Gold flowering 3	5.485
	CRR073318	Tawny withering 1	10.058
	CRR073319	Tawny withering 2	7.417
	CRR073320	Tawny withering 3	9.915