Gene detail

Detail information of GWHGAAZE027866

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009804255.1	0	PREDICTED: inositol-tetrakisphosphate 1-kinase 1-like [Nicotiana sylvestris]
Swissprot	tr\|Q84Y01\|ITPK1_MAIZE	3E-137	Inositol-tetrakisphosphate 1-kinase 1
trEMBL	tr\|M1BIH6\|M1BIH6_SOLTU	0	Inositol-tetrakisphosphate 1-kinase {ECO:0000256\|PIRNR:PIRNR038186}
TAIR10	AT5G16760.1	5E-92	Inositol 1,3,4-trisphosphate 5/6-kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	30491319	30492903	-
GWHAAZE00000008	mRNA	30491319	30492903	-
GWHAAZE00000008	exon	30491319	30492095	-
GWHAAZE00000008	exon	30492610	30492903	-
GWHAAZE00000008	CDS	30492610	30492903	-
GWHAAZE00000008	CDS	30491319	30492095	-

Transcript Sequence
>GWHTAAZE027900 ATGGCGGAAATTCGGAGATTCGGAGTAGGTTACGCTCTCGCACCAAAAAAGAGGAATAGTTTCATTCAAGCTTCGTTGGTGAATCTCGCGAGAGAGAAGGGAATCGATCTAATTCAGATCGATACGGGTAAGCCTTTGATAGATCAAGGACCTTTCGATTGTGTTCTACACAAGTGTTACGGAGAGGATTGGAAGAGGCAGCTTAATGATTATTCAGTTAAGTACCCTAATGTTTTGATAATCGACTCGCCTGAGGCTATTGAGAGGCTACACAATCGGATTTCGATGCTGCAGGTTGTTTCGGAGCTGAAGATTGAGAACTCAATGGGTTCGTTTGGGATTCCAATGCAGACAGTCATTTATGATTCGGATACACTTTTGGACACGTCGGTTTGGGGTGAGGGTCTGAAATTTCCGGTGATTGCAAAGCCATTAGTGGCGGATGGAAGTGCAAAATCGCACAAGATGTCGCTGGTATTCAGCCATGAAGGATTGCAGAAACTGAAACCACCAATTGTTTTGCAGCAGTTTGTGAATCACGGTGGTGTAATCTTCAAGGTGTATGTGGTGGGTGGGTATGTGAAATGTGTGAAGAGGAAGTCCTTGCCTGATGTGAGTGAGGAGAAATTGGGGAGTTTGGTGGGTTCGTTGCCGTTTTCGCAGGTTTCAAATTTATCTACTAACGAAAGAAATGATGATAAGTACTACAAGATGATGAATTTGGAAGATACTGAAATGCCACCGCAGTGTTTGATCACTGATATTGCTCGTGGGTTACGACAGGCAATGAAATTACATCTTTTCAACTTTGATGTAATTAGAGACACTAGAATCGGAAATAGATACCTTGTTATTGACATAAACTATTTCCCTGGTTATGCAAAGATGCCCAATTATGAGTTGGTTTTGACTGACTTCTTTTTGGATGTATTAAACAAGAATGGGGTTGCTTTCGACAGTTTGCGGTCGATCAGTTGTGAAAAAGAAGCAAGAAAGTTGGTAGCCAATGACGAGGCCCTTCCAGTTTCACCTCTAAAGAGGGAAGAAAAGGAGAATGCTATCCAAGTCTGA

Network for GWHGAAZE027866

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17927.2	Ins134_P3_kin_N	9	87	3.30E-30
PF05770.12	Ins134_P3_kin	108	309	1.20E-82

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00913	ITPK1	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Phosphatidylinositol signaling system	map04070

Gene Ontology

GO term	Ontology	Name
GO:0032957	biological_process	inositol trisphosphate metabolic process
GO:0000287	molecular_function	magnesium ion binding
GO:0005524	molecular_function	ATP binding
GO:0047325	molecular_function	inositol tetrakisphosphate 1-kinase activity
GO:0052725	molecular_function	inositol-1,3,4-trisphosphate 6-kinase activity
GO:0052726	molecular_function	inositol-1,3,4-trisphosphate 5-kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	59.121
	SRR3591706	second leaf	19.382
	SRR3591707	mature leaf	15.686
	SRR3591708	Shoot apex	48.195
	SRR3591709	Stem	24.770
	SRR3591710	White floral bud	25.461
	SRR3591711	White flower	33.202
	SRR3591712	Green floral bud	23.288
	SRR3591713	Yellow flower	23.778
SRP173429	SRR8316895	Juvenile bud stage	25.036
	SRR8316896	Juvenile bud stage	21.528
	SRR8316897	Juvenile bud stage	14.841
	SRR8316894	Third green stage	7.037
	SRR8316900	Third green stage	14.410
	SRR8316901	Third green stage	18.260
	SRR8316898	Complete white stage	9.651
	SRR8316899	Complete white stage	35.640
	SRR8316903	Complete white stage	16.759
	SRR8316902	Silver flowering stage	10.375
	SRR8316904	Silver flowering stage	13.366
	SRR8316905	Silver flowering stage	7.362
	SRR8316906	Gold flowering stage	18.228
	SRR8316907	Gold flowering stage	16.685
	SRR8316908	Gold flowering stage	13.620
SRP132670	SRR6706286	Control	14.156
	SRR6706287	Light intensity 50%	16.179
	SRR6706288	Light intensity 20%	15.294
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.744
	CNS0095593	Slightly white alabastrum(diploid) 2	18.223
	CNS0095594	Slightly white alabastrum(diploid) 3	22.415
	CNS0095595	Whole white alabastrum(diploid) 2	15.573
	CNS0095596	Whole white alabastrum(diploid) 3	13.712
	CNS0095597	Whole white alabastrum(diploid) 4	12.323
	CNS0095598	Silvery flower (diploied) 1	19.536
	CNS0095599	Silvery flower (diploied) 2	11.923
	CNS0095600	Silvery flower (diploied) 3	18.370
	CNS0095601	Golden flower (diploid) 1	18.069
	CNS0095602	Golden flower (diploid) 2	23.736
	CNS0095603	Golden flower (diploid) 3	23.286
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.365
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.488
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.817
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.340
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.141
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.069
	CNS0095610	Silvery flower (tetraploid) 1	12.179
	CNS0095611	Silvery flower (tetraploid) 2	11.297
	CNS0095612	Silvery flower (tetraploid) 3	13.912
	CNS0095613	Golden flower (tetraploid) 1	7.858
	CNS0095614	Golden flower (tetraploid) 2	12.019
	CNS0095615	Golden flower (tetraploid) 3	11.263
CRA001975	CRR073297	Stem 1	26.133
	CRR073298	Stem 2	24.543
	CRR073299	Stem 3	24.060
	CRR073300	Leaf 1	23.792
	CRR073301	Leaf 2	27.685
	CRR073302	Leaf 3	19.144
	CRR073303	Juvenile bud 1	21.748
	CRR073304	Juvenile bud 2	17.521
	CRR073305	Juvenile bud 3	26.182
	CRR073306	Third green 1	20.784
	CRR073307	Third green 2	17.070
	CRR073308	Third green 3	17.531
	CRR073309	Second white 1	17.310
	CRR073310	Second white 2	17.915
	CRR073311	Second white 3	16.926
	CRR073312	Silver flowering 1	22.620
	CRR073313	Silver flowering 2	17.763
	CRR073314	Silver flowering 3	11.076
	CRR073315	Gold flowering 1	20.923
	CRR073316	Gold flowering 2	20.540
	CRR073317	Gold flowering 3	22.795
	CRR073318	Tawny withering 1	23.106
	CRR073319	Tawny withering 2	18.611
	CRR073320	Tawny withering 3	24.493