Gene detail

Detail information of GWHGAAZE027889

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006343627.1	4.32492E-27	PREDICTED: 60S acidic ribosomal protein P2-like [Solanum tuberosum]
Swissprot	tr\|O24415\|RLA2B_MAIZE	1E-27	60S acidic ribosomal protein P2B
trEMBL	tr\|M1AS83\|M1AS83_SOLTU	2E-27	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400029096}
TAIR10	AT2G27710.3	6E-18	60S acidic ribosomal protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	31070120	31071379	-
GWHAAZE00000008	mRNA	31070120	31071379	-
GWHAAZE00000008	exon	31070120	31070466	-
GWHAAZE00000008	exon	31070941	31071379	-
GWHAAZE00000008	CDS	31070941	31071379	-
GWHAAZE00000008	CDS	31070120	31070466	-

Transcript Sequence
>GWHTAAZE027923 ATGACTCTTTGGATTGTTTATGAGGGAAGAGGAGATGGGCCTGTAATGACTCATTCTCCTGAGGCCATTATCATGAATAGAACAAATGGTGTTGAGCTGAGACATACATTTCCATTAAGTTATGGCCCACACAATCCTGGCCGCCATTCTTGGGTGTGCCATATACCAGTCATTTATCTTGGCTACCCAATTAGAGGTGGAGAAGAAATGGAGGTTTCGTTTGAAATAAATCACCCTCTGGAGGTGAAGCAATGCGGGATTCATCTGGTATACAAACCAAACATCGAAGAGGATGATCAAGGCCAATTTCATGGTGTCAATGGGGATGATGAGGATGATCAAGGCCAATTTCATGGTGTCAATGGGGATGATGTTGAACATGAAACCCCAATTTTGATGGAAAAAAGGAGTTCTTTATGTGAACATTTCCCTTTATTTGAGAGCAGAATGAAGGTAATCGCTGCATATTTGTTGGCTGTGTTAGGAGGAGACACCAATCCATTGGCTGATGATTTGAAGGCTATTCTCGGTTCTGTTGGAGCTGAGGCTAATGAAGAGAAAATTGAATTACTCTTGGCTGAAGTTAAGGGTAAAGATATTGCTGAACTTCTAGCAGCTGGTAGGGAGAAGTTAGGTTCTGTTCCTTCTGGCGGTGCCACAGTTTCTGTGACTGGTGGTGGTGCCACCGCTGCTGCTCCTGCTGCTGAGGAGCCCAAGAAAGAAGAGAAAAAGGTGGAAGAAGAGTCAGATGAGGAGGATGATTTGATCATTAATCTCTTTGACTAA

Network for GWHGAAZE027889

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00428.20	Ribosomal_60s	167	260	1.30E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02943	RP-LP2, RPLP2	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006414	biological_process	translational elongation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.734
	SRR3591706	second leaf	0.896
	SRR3591707	mature leaf	0.806
	SRR3591708	Shoot apex	1.937
	SRR3591709	Stem	2.851
	SRR3591710	White floral bud	0.807
	SRR3591711	White flower	0.775
	SRR3591712	Green floral bud	1.432
	SRR3591713	Yellow flower	0.650
SRP173429	SRR8316895	Juvenile bud stage	3.637
	SRR8316896	Juvenile bud stage	3.972
	SRR8316897	Juvenile bud stage	2.824
	SRR8316894	Third green stage	0.915
	SRR8316900	Third green stage	1.744
	SRR8316901	Third green stage	2.222
	SRR8316898	Complete white stage	0.145
	SRR8316899	Complete white stage	2.870
	SRR8316903	Complete white stage	0.943
	SRR8316902	Silver flowering stage	0.362
	SRR8316904	Silver flowering stage	0.843
	SRR8316905	Silver flowering stage	0.706
	SRR8316906	Gold flowering stage	1.352
	SRR8316907	Gold flowering stage	0.899
	SRR8316908	Gold flowering stage	1.291
SRP132670	SRR6706286	Control	1.411
	SRR6706287	Light intensity 50%	1.504
	SRR6706288	Light intensity 20%	1.483
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.218
	CNS0095593	Slightly white alabastrum(diploid) 2	3.456
	CNS0095594	Slightly white alabastrum(diploid) 3	3.230
	CNS0095595	Whole white alabastrum(diploid) 2	4.123
	CNS0095596	Whole white alabastrum(diploid) 3	1.190
	CNS0095597	Whole white alabastrum(diploid) 4	3.465
	CNS0095598	Silvery flower (diploied) 1	1.888
	CNS0095599	Silvery flower (diploied) 2	3.522
	CNS0095600	Silvery flower (diploied) 3	2.796
	CNS0095601	Golden flower (diploid) 1	3.448
	CNS0095602	Golden flower (diploid) 2	4.010
	CNS0095603	Golden flower (diploid) 3	2.870
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.422
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.075
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.732
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.772
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.852
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.654
	CNS0095610	Silvery flower (tetraploid) 1	4.172
	CNS0095611	Silvery flower (tetraploid) 2	4.644
	CNS0095612	Silvery flower (tetraploid) 3	2.996
	CNS0095613	Golden flower (tetraploid) 1	1.888
	CNS0095614	Golden flower (tetraploid) 2	2.134
	CNS0095615	Golden flower (tetraploid) 3	2.952
CRA001975	CRR073297	Stem 1	2.663
	CRR073298	Stem 2	1.294
	CRR073299	Stem 3	0.903
	CRR073300	Leaf 1	0.837
	CRR073301	Leaf 2	1.539
	CRR073302	Leaf 3	0.227
	CRR073303	Juvenile bud 1	0.659
	CRR073304	Juvenile bud 2	0.282
	CRR073305	Juvenile bud 3	0.751
	CRR073306	Third green 1	0.308
	CRR073307	Third green 2	0.036
	CRR073308	Third green 3	0.321
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.738
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.195
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.142
	CRR073315	Gold flowering 1	1.072
	CRR073316	Gold flowering 2	1.723
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.404
	CRR073319	Tawny withering 2	2.591
	CRR073320	Tawny withering 3	2.054