Gene detail

Detail information of GWHGAAZE027917

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006352922.1	0	PREDICTED: phosphoribulokinase, chloroplastic-like [Solanum tuberosum]
COG	YP_007125164.1	3E-172	uridine kinase
Swissprot	tr\|P25697\|KPPR_ARATH	0	Phosphoribulokinase, chloroplastic (Precursor)
trEMBL	tr\|M1AJF6\|M1AJF6_SOLTU	0	Phosphoribulokinase {ECO:0000256\|RuleBase:RU004082}
TAIR10	AT1G32060.1	0	phosphoribulokinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	31817561	31823805	-
GWHAAZE00000008	mRNA	31817561	31823805	-
GWHAAZE00000008	exon	31817561	31817812	-
GWHAAZE00000008	exon	31818223	31818467	-
GWHAAZE00000008	exon	31820493	31820577	-
GWHAAZE00000008	exon	31820877	31820961	-
GWHAAZE00000008	exon	31823273	31823805	-
GWHAAZE00000008	CDS	31823273	31823805	-
GWHAAZE00000008	CDS	31820877	31820961	-
GWHAAZE00000008	CDS	31820493	31820577	-
GWHAAZE00000008	CDS	31818223	31818467	-
GWHAAZE00000008	CDS	31817561	31817812	-

Transcript Sequence
>GWHTAAZE027951 ATGGCTGCTTGTACAGTCTACACAGTCCAATTCCTCAATTCCACACAATCAATTTCCTCAACCCACTTGAAATTCCACCAAAAACAACAGCTCTTCTTCAAGAAAACCAACAGTAGTAACAGGAGAGTGATAACATGCGCAGCAGGTGACTCACAGACAATTGTGATTGGTCTAGCAGCAGACTCAGGGTGTGGTAAGAGCACCTTCATGAGGAGGCTTACTAGTGTGTTTGGGGGTGCAGCAGAGCCACCAAAGGGAGGCAACCCAGATTCAAACACGTTGATAAGTGACACTACCACTGTGATATGCTTGGATGATTACCATTCATTGGATAGGACAGGTAGGAAAAAGGAAGGGGTGACTGCACTTGATCCAAGGGCTAATGACTTTGATCTTATGTATGAGCAAGTTAAGGCACTTAAAAGTGGGGTTACTGTTGATAAGCCTATTTATAACCATGTTTCTGGTCTTTTGGACCCTCCTGAGCTCATCAAGCCCCCCAAGATCCTTGTCATTGAGGGATTGCACCCAATGTACGATGAAAGGGTGAGGGACCTCTTGGACTTCAGTATATACTTGGACATCAGCAATGAGGTTAAATTCGCATGGAAAATTCAGAGAGACATGGCTGAGAGAGGACACAGTCTTGAAAGTATCAAAGCCAGCATTGAAGCCAGAAAACCAGATTTTGATGCTTATATTGATCCACAAAAGCAATACGCAGATGCCGTAATCGAGGTGTTGCCGACGGAATTGATACCGGACGACAACGAAGGGAAGGTGTTGAGAGTGAAGCTGATAATGAAAGAGGGAGTGAAGCATTTCAATCCCGTGTATCTCTTTGACGAGGGCTCTACTATCTCTTGGATCCCCTGTGGAAGGAAGCTCACTTGCTCTTACCCCGGCATCAAGTTTGCCTACGGCCCTGACTCCTACTATGGCCATGAGGTGTCAGTGTTGGAGATGGATGGACAATTCGACAGATTAGATGAACTCATCTATGTCGAAAGCCACTTAAGCAGCATCTCCACCAAGTTCTACGGCGAGGTGACGCAGCAGATGCTAAAACACTCGGACTTTCCTGGTAGTAACAACGGCACTGGTCTCTTCCAAACCATCGTTGGTTTAAAAATCAGAGACCTCTACGAGCAACTCATCGCCGCTAAGGCGTCGGCTCCACTTGAAGCCACGAAAGCTTAA

Network for GWHGAAZE027917

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00485.19	PRK	55	253	2.20E-78

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00855	PRK, prkB	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity
GO:0008974	molecular_function	phosphoribulokinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	326.282
	SRR3591706	second leaf	1461.036
	SRR3591707	mature leaf	1643.112
	SRR3591708	Shoot apex	480.642
	SRR3591709	Stem	234.924
	SRR3591710	White floral bud	13.853
	SRR3591711	White flower	29.783
	SRR3591712	Green floral bud	20.750
	SRR3591713	Yellow flower	2.125
SRP173429	SRR8316895	Juvenile bud stage	124.325
	SRR8316896	Juvenile bud stage	104.338
	SRR8316897	Juvenile bud stage	85.480
	SRR8316894	Third green stage	39.239
	SRR8316900	Third green stage	50.081
	SRR8316901	Third green stage	45.224
	SRR8316898	Complete white stage	1.892
	SRR8316899	Complete white stage	17.185
	SRR8316903	Complete white stage	11.849
	SRR8316902	Silver flowering stage	0.686
	SRR8316904	Silver flowering stage	0.979
	SRR8316905	Silver flowering stage	0.401
	SRR8316906	Gold flowering stage	1.750
	SRR8316907	Gold flowering stage	1.028
	SRR8316908	Gold flowering stage	1.646
SRP132670	SRR6706286	Control	59.042
	SRR6706287	Light intensity 50%	37.829
	SRR6706288	Light intensity 20%	34.029
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	58.830
	CNS0095593	Slightly white alabastrum(diploid) 2	31.979
	CNS0095594	Slightly white alabastrum(diploid) 3	48.080
	CNS0095595	Whole white alabastrum(diploid) 2	25.659
	CNS0095596	Whole white alabastrum(diploid) 3	21.272
	CNS0095597	Whole white alabastrum(diploid) 4	18.154
	CNS0095598	Silvery flower (diploied) 1	120.447
	CNS0095599	Silvery flower (diploied) 2	108.049
	CNS0095600	Silvery flower (diploied) 3	22.945
	CNS0095601	Golden flower (diploid) 1	128.960
	CNS0095602	Golden flower (diploid) 2	78.069
	CNS0095603	Golden flower (diploid) 3	70.097
	CNS0095604	Slightly white alabastrum(tetraploid) 1	50.357
	CNS0095605	Slightly white alabastrum(tetraploid) 2	63.807
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.942
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.375
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.412
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.754
	CNS0095610	Silvery flower (tetraploid) 1	8.936
	CNS0095611	Silvery flower (tetraploid) 2	28.235
	CNS0095612	Silvery flower (tetraploid) 3	6.481
	CNS0095613	Golden flower (tetraploid) 1	3.768
	CNS0095614	Golden flower (tetraploid) 2	9.720
	CNS0095615	Golden flower (tetraploid) 3	2.959
CRA001975	CRR073297	Stem 1	228.679
	CRR073298	Stem 2	179.962
	CRR073299	Stem 3	248.005
	CRR073300	Leaf 1	16.789
	CRR073301	Leaf 2	27.171
	CRR073302	Leaf 3	18.552
	CRR073303	Juvenile bud 1	10.208
	CRR073304	Juvenile bud 2	7.815
	CRR073305	Juvenile bud 3	17.076
	CRR073306	Third green 1	1.585
	CRR073307	Third green 2	0.540
	CRR073308	Third green 3	3.955
	CRR073309	Second white 1	1.584
	CRR073310	Second white 2	0.860
	CRR073311	Second white 3	0.138
	CRR073312	Silver flowering 1	0.775
	CRR073313	Silver flowering 2	0.422
	CRR073314	Silver flowering 3	1.397
	CRR073315	Gold flowering 1	1758.747
	CRR073316	Gold flowering 2	2099.400
	CRR073317	Gold flowering 3	1321.048
	CRR073318	Tawny withering 1	174.982
	CRR073319	Tawny withering 2	143.049
	CRR073320	Tawny withering 3	130.897