Detail information of GWHGAAZE027924


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAIK21784.10phosphomevalonate kinase [Panax notoginseng]
COGYP_004458672.10.000000004GHMP kinase
trEMBLtr|A0A076V5N5|A0A076V5N5_9APIA0Phosphomevalonate kinase {ECO:0000313|EMBL:AIK21784.1}
TAIR10AT1G31910.11E-147GHMP kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene3190105731910887-
GWHAAZE00000008mRNA3190105731910887-
GWHAAZE00000008exon3190105731901564-
GWHAAZE00000008exon3190244131902563-
GWHAAZE00000008exon3190328131903508-
GWHAAZE00000008exon3190414631904250-
GWHAAZE00000008exon3190592831906245-
GWHAAZE00000008exon3190812031908172-
GWHAAZE00000008exon3190826531908374-
GWHAAZE00000008exon3190894031908989-
GWHAAZE00000008exon3190945331909603-
GWHAAZE00000008exon3190989431909953-
GWHAAZE00000008exon3191067231910887-
GWHAAZE00000008five_prime_UTR3191067231910887-
GWHAAZE00000008five_prime_UTR3190990231909953-
GWHAAZE00000008CDS3190989431909901-
GWHAAZE00000008CDS3190945331909603-
GWHAAZE00000008CDS3190894031908989-
GWHAAZE00000008CDS3190826531908374-
GWHAAZE00000008CDS3190812031908172-
GWHAAZE00000008CDS3190592831906245-
GWHAAZE00000008CDS3190414631904250-
GWHAAZE00000008CDS3190328131903508-
GWHAAZE00000008CDS3190244131902563-
GWHAAZE00000008CDS3190129531901564-
GWHAAZE00000008three_prime_UTR3190105731901294-
Transcript Sequence

Network for GWHGAAZE027924

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00288.27GHMP_kinases_N1582337.70E-15
PF08544.14GHMP_kinases_C3704329.80E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00938E2.7.4.2, mvaK2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0004631molecular_functionphosphomevalonate kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf34.052
SRR3591706second leaf23.534
SRR3591707mature leaf22.410
SRR3591708Shoot apex31.601
SRR3591709Stem38.465
SRR3591710White floral bud25.792
SRR3591711White flower24.181
SRR3591712Green floral bud29.722
SRR3591713Yellow flower26.566
SRP173429 SRR8316895Juvenile bud stage 20.118
SRR8316896Juvenile bud stage 23.785
SRR8316897Juvenile bud stage 12.718
SRR8316894Third green stage 10.443
SRR8316900Third green stage 35.668
SRR8316901Third green stage 27.796
SRR8316898Complete white stage 12.902
SRR8316899Complete white stage 42.580
SRR8316903Complete white stage 17.046
SRR8316902Silver flowering stage4.936
SRR8316904Silver flowering stage7.206
SRR8316905Silver flowering stage3.145
SRR8316906Gold flowering stage 14.015
SRR8316907Gold flowering stage 13.509
SRR8316908Gold flowering stage 13.756
SRP132670SRR6706286Control33.894
SRR6706287Light intensity 50%34.152
SRR6706288Light intensity 20%39.863
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.423
CNS0095593Slightly white alabastrum(diploid) 228.697
CNS0095594Slightly white alabastrum(diploid) 321.566
CNS0095595Whole white alabastrum(diploid) 222.226
CNS0095596Whole white alabastrum(diploid) 323.108
CNS0095597Whole white alabastrum(diploid) 423.823
CNS0095598Silvery flower (diploied) 124.907
CNS0095599Silvery flower (diploied) 225.123
CNS0095600Silvery flower (diploied) 323.373
CNS0095601Golden flower (diploid) 119.566
CNS0095602Golden flower (diploid) 225.802
CNS0095603Golden flower (diploid) 324.410
CNS0095604Slightly white alabastrum(tetraploid) 129.592
CNS0095605Slightly white alabastrum(tetraploid) 224.464
CNS0095606Slightly white alabastrum(tetraploid) 348.290
CNS0095607Whole white alabastrum(tetraploid) 118.516
CNS0095608Whole white alabastrum(tetraploid) 216.660
CNS0095609Whole white alabastrum(tetraploid) 338.900
CNS0095610Silvery flower (tetraploid) 128.314
CNS0095611Silvery flower (tetraploid) 225.317
CNS0095612Silvery flower (tetraploid) 323.051
CNS0095613Golden flower (tetraploid) 116.926
CNS0095614Golden flower (tetraploid) 225.811
CNS0095615Golden flower (tetraploid) 310.624
CRA001975CRR073297Stem 126.848
CRR073298Stem 223.486
CRR073299Stem 325.146
CRR073300Leaf 140.702
CRR073301Leaf 235.450
CRR073302Leaf 340.628
CRR073303Juvenile bud 140.217
CRR073304Juvenile bud 237.193
CRR073305Juvenile bud 336.261
CRR073306Third green 112.123
CRR073307Third green 29.468
CRR073308Third green 312.924
CRR073309Second white 110.866
CRR073310Second white 210.979
CRR073311Second white 37.832
CRR073312Silver flowering 110.405
CRR073313Silver flowering 28.628
CRR073314Silver flowering 36.770
CRR073315Gold flowering 110.036
CRR073316Gold flowering 216.324
CRR073317Gold flowering 310.530
CRR073318Tawny withering 121.787
CRR073319Tawny withering 215.607
CRR073320Tawny withering 316.627