Gene detail

Detail information of GWHGAAZE027925

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFO84070.1	0	alpha-amylase [Actinidia chinensis]
COG	YP_003951996.1	8E-104	alpha-amylase
Swissprot	tr\|P17859\|AMYA_VIGMU	0	Alpha-amylase (Precursor)
trEMBL	tr\|S4SLG7\|S4SLG7_ACTCH	0	Alpha-amylase {ECO:0000256\|RuleBase:RU361134}
TAIR10	AT4G25000.1	4E-162	alpha-amylase-like

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	31926089	31927622	+
GWHAAZE00000008	mRNA	31926089	31927622	+
GWHAAZE00000008	exon	31926089	31926221	+
GWHAAZE00000008	exon	31926469	31927268	+
GWHAAZE00000008	exon	31927371	31927622	+
GWHAAZE00000008	CDS	31926089	31926221	+
GWHAAZE00000008	CDS	31926469	31927268	+
GWHAAZE00000008	CDS	31927371	31927622	+

Transcript Sequence
>GWHTAAZE027959 GGTTTTAACTGGGCATCAAATAAGAAGGAAGGAGGATGGTACAACTCACTGATGAATTCAGTCTCAGACATAGCTGCTGCTGGGGTTACCCATGTTTGGCTCCCTCCACCCTCTCAATCTGTAGCTCCCGAAGGATATTTGCCAGGAAGGTTATATGATCTCAATTCAAGATATGGGAATGAAGCCGAATTAAAAGCTTTAATTAACGCCTTCCACAGTAAAGGTATAAAATGCATAGCTGACATAGTAATAAACCACAGAACTGCAGAGAAACAAGATAGTAGAGGGATATGGTGCATATTTGAGGGAGGAACAGCTGATGACCGTCTAGACTGGGGACCAACCCTCATTTGCAAAAATGATACGCAATACTCCGATGGCCTAGGAAACAATGATACTGGAACTGACTTTCCGGGTGCTCCCGATATTGACCATCTTAACCCTAGAGTACAAAGAGAGTTATCTGATTGGATGAACTGGCTAAAGACTGAAATTGGATTTGACGGGTGGCGATTTGACTACGCCTTAGGCTACTCTCCGAGTATCACTAAGGTCTACATGGAAAACACTTCCCCAGATTTTGCAGTCGGGGAAATCTGGAATTCGCTTTTGAAGGAGCAAGATGAAAAACTGGCATATAACCAGGACCCACATCGTAATGAGTTGGCTCAGTGGGTCAAAAATAGCGGTGGGGTTGTGACCGCTTTTGATTTCACAACCAAGGGAATTCTTCAGGCTGCGATGAATGGAGAACTATGGAGAATGAAGGACTCGAATGGAAATCCTCCGGGGATGATTGGGATTTTACCGGGAAATGCTGCCACCTTTATTGACAATCACGATACCTATTCGCAAAATTTATCACCATTTCCATCAGAAAAAGTCCTTCAAGGATATGTTTATATTCTCACTCATCCGGGGGTACCATCACTGTTTTATGATCACTTCTTTGAATGGGGACTGAAGGATGAAATTATCAAATTGACTACAATTAGGGCAAGGAATGGGATCAATGCAACAAGCAAAGTGCAAATTATGGTAGCTGATTCGGATTTGTATGTCGCAATGATCGATGACAAAGTTATTGCAAAGATTGGGCCGAAGTATGACGTTGGAAATATTATTCCACCAAATTTTCAAATTGCTACCTCTGGGTTAGACTATGCTGTGTGGGAGAAAAAGTGA

Network for GWHGAAZE027925

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00128.25	Alpha-amylase	26	212	8.10E-17
PF07821.13	Alpha-amyl_C2	334	392	5.40E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01176	AMY, amyA, malS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Pancreatic secretion	map04972
		Carbohydrate digestion and absorption	map04973

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004556	molecular_function	alpha-amylase activity
GO:0005509	molecular_function	calcium ion binding
GO:0043169	molecular_function	cation binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.042
	SRR3591706	second leaf	6.909
	SRR3591707	mature leaf	8.579
	SRR3591708	Shoot apex	10.541
	SRR3591709	Stem	33.398
	SRR3591710	White floral bud	29.405
	SRR3591711	White flower	58.101
	SRR3591712	Green floral bud	4.710
	SRR3591713	Yellow flower	80.671
SRP173429	SRR8316895	Juvenile bud stage	4.321
	SRR8316896	Juvenile bud stage	2.016
	SRR8316897	Juvenile bud stage	1.435
	SRR8316894	Third green stage	1.487
	SRR8316900	Third green stage	3.783
	SRR8316901	Third green stage	2.336
	SRR8316898	Complete white stage	11.574
	SRR8316899	Complete white stage	12.203
	SRR8316903	Complete white stage	14.355
	SRR8316902	Silver flowering stage	22.961
	SRR8316904	Silver flowering stage	36.919
	SRR8316905	Silver flowering stage	17.087
	SRR8316906	Gold flowering stage	44.723
	SRR8316907	Gold flowering stage	40.072
	SRR8316908	Gold flowering stage	39.273
SRP132670	SRR6706286	Control	10.956
	SRR6706287	Light intensity 50%	9.773
	SRR6706288	Light intensity 20%	5.184
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.468
	CNS0095593	Slightly white alabastrum(diploid) 2	5.510
	CNS0095594	Slightly white alabastrum(diploid) 3	6.311
	CNS0095595	Whole white alabastrum(diploid) 2	5.388
	CNS0095596	Whole white alabastrum(diploid) 3	2.559
	CNS0095597	Whole white alabastrum(diploid) 4	5.193
	CNS0095598	Silvery flower (diploied) 1	41.457
	CNS0095599	Silvery flower (diploied) 2	26.795
	CNS0095600	Silvery flower (diploied) 3	47.107
	CNS0095601	Golden flower (diploid) 1	29.911
	CNS0095602	Golden flower (diploid) 2	52.538
	CNS0095603	Golden flower (diploid) 3	50.289
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.831
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.254
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.306
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.630
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.981
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.556
	CNS0095610	Silvery flower (tetraploid) 1	72.569
	CNS0095611	Silvery flower (tetraploid) 2	85.473
	CNS0095612	Silvery flower (tetraploid) 3	75.445
	CNS0095613	Golden flower (tetraploid) 1	83.510
	CNS0095614	Golden flower (tetraploid) 2	95.285
	CNS0095615	Golden flower (tetraploid) 3	47.109
CRA001975	CRR073297	Stem 1	3.731
	CRR073298	Stem 2	2.468
	CRR073299	Stem 3	1.902
	CRR073300	Leaf 1	3.273
	CRR073301	Leaf 2	3.615
	CRR073302	Leaf 3	1.639
	CRR073303	Juvenile bud 1	5.523
	CRR073304	Juvenile bud 2	5.200
	CRR073305	Juvenile bud 3	6.604
	CRR073306	Third green 1	32.438
	CRR073307	Third green 2	26.281
	CRR073308	Third green 3	28.563
	CRR073309	Second white 1	29.916
	CRR073310	Second white 2	24.110
	CRR073311	Second white 3	23.214
	CRR073312	Silver flowering 1	52.930
	CRR073313	Silver flowering 2	47.468
	CRR073314	Silver flowering 3	49.357
	CRR073315	Gold flowering 1	11.918
	CRR073316	Gold flowering 2	15.432
	CRR073317	Gold flowering 3	16.295
	CRR073318	Tawny withering 1	40.292
	CRR073319	Tawny withering 2	67.030
	CRR073320	Tawny withering 3	19.053