Gene detail

Detail information of GWHGAAZE027926

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFO84070.1	0	alpha-amylase [Actinidia chinensis]
COG	YP_003951996.1	4E-87	alpha-amylase
Swissprot	tr\|P17859\|AMYA_VIGMU	0	Alpha-amylase (Precursor)
trEMBL	tr\|S4SLG7\|S4SLG7_ACTCH	0	Alpha-amylase {ECO:0000256\|RuleBase:RU361134}
TAIR10	AT4G25000.1	2E-141	alpha-amylase-like

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	31954063	31955271	+
GWHAAZE00000008	mRNA	31954063	31955271	+
GWHAAZE00000008	exon	31954063	31954917	+
GWHAAZE00000008	exon	31955020	31955271	+
GWHAAZE00000008	CDS	31954063	31954917	+
GWHAAZE00000008	CDS	31955020	31955271	+

Transcript Sequence
>GWHTAAZE027960 ATGTATGTTTCATCTGAAATCTCTCAACCATGTTCTTTATCCACTCCTTTTGCAGGATATTTGCCAGGAAGGTTATATGATCTCAACTCAAAATATGGGAGTCAAGCCGAATTAAAAGATTTAATTAAAGCCTTCCACAATAAAGGTATAAAATGCATAGCTGATATAGTAATAAACCACAGAACTGCAGAGAAACAAGATAGCAGAGGGATATGGTGCCTATTTGAAGGAGGAACAGCTGATGACCGTCTAGACTGGGGACCATCATTCATTTGCAAAAACGATACGAAATACTCCAATGGCCTAGGAAACCCTGATACTGGAGCAGACTTTAAGGATGCTCCTGATATTGACCATCTTAATCCTAGAGTGCGAAGAGAGTTATCCGATTGGATGAACTGGCTAAAGACTGAAATTGGATTTGCCGGGTGGCGATTTGACTTTGCTCCGGGCTACTCTCCTAGTATCACTAAGGTCTATATGCAAAAAACTTCCCCCGATTTTGCAGTCGGGGAAATCTGGAATTCACTTTCGTATGAGCAAAATGGAAAACCAGCATATAACCAGGACCAACATCGTAATGAGTTGGCTGAGTGGGTCAAAAATAGCGGTGGCGTTGTGAACTCTTTTGATTTTACAACCAAGGGAATTCTTCAGGCTGCGATGAATGGAGAATTGTGGAGAATGAAGGACTCGAACGGAAATCCTCCGGGGATGATTGGGATTTTACCAGGAAATGCTGCCACCTTTATTGACAATCACGATACCTATTTGCAAAATTTATGGCCATTTCCATCAGAGAAAGTCCTTCAAGGATATGCCTATATTCTCACTCATCCGGGGGTACCATCATTGTTTTATGATCACTTCTTTGAATGGGGATTGAAGGATGAAATTATCAAATTGACTACAATTAGGGCAAGGAATGGGATTAGTGCAACAAGCAAAGTGCAAATTATGGTAGCTGATTCGGATTTGTATGTCGCAATGATCGATGACAAAGTTATTACAAAGATTGGGCCAAAGTATGATGTTGGAAATATTATTCCACCAAATTTTCAAATTGCTTCCTCTGGGTTAGACTATTGTGTGTGGGAAAAAAAGTGA

Network for GWHGAAZE027926

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00128.25	Alpha-amylase	19	198	4.00E-13
PF07821.13	Alpha-amyl_C2	308	366	1.50E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01176	AMY, amyA, malS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Pancreatic secretion	map04972
		Carbohydrate digestion and absorption	map04973

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004556	molecular_function	alpha-amylase activity
GO:0005509	molecular_function	calcium ion binding
GO:0003824	molecular_function	catalytic activity
GO:0043169	molecular_function	cation binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.065
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.029
	SRR3591709	Stem	0.233
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.253
	SRR3591713	Yellow flower	0.048
SRP173429	SRR8316895	Juvenile bud stage	0.089
	SRR8316896	Juvenile bud stage	0.029
	SRR8316897	Juvenile bud stage	0.047
	SRR8316894	Third green stage	0.065
	SRR8316900	Third green stage	0.046
	SRR8316901	Third green stage	0.063
	SRR8316898	Complete white stage	0.236
	SRR8316899	Complete white stage	0.174
	SRR8316903	Complete white stage	0.060
	SRR8316902	Silver flowering stage	0.418
	SRR8316904	Silver flowering stage	0.931
	SRR8316905	Silver flowering stage	0.336
	SRR8316906	Gold flowering stage	0.264
	SRR8316907	Gold flowering stage	0.286
	SRR8316908	Gold flowering stage	0.188
SRP132670	SRR6706286	Control	0.116
	SRR6706287	Light intensity 50%	0.107
	SRR6706288	Light intensity 20%	0.136
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.112
	CNS0095593	Slightly white alabastrum(diploid) 2	0.133
	CNS0095594	Slightly white alabastrum(diploid) 3	0.106
	CNS0095595	Whole white alabastrum(diploid) 2	0.204
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.306
	CNS0095598	Silvery flower (diploied) 1	0.061
	CNS0095599	Silvery flower (diploied) 2	0.935
	CNS0095600	Silvery flower (diploied) 3	0.375
	CNS0095601	Golden flower (diploid) 1	0.502
	CNS0095602	Golden flower (diploid) 2	0.846
	CNS0095603	Golden flower (diploid) 3	0.663
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.103
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.214
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.081
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.039
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.026
	CNS0095610	Silvery flower (tetraploid) 1	0.385
	CNS0095611	Silvery flower (tetraploid) 2	0.320
	CNS0095612	Silvery flower (tetraploid) 3	0.220
	CNS0095613	Golden flower (tetraploid) 1	0.502
	CNS0095614	Golden flower (tetraploid) 2	0.781
	CNS0095615	Golden flower (tetraploid) 3	0.291
CRA001975	CRR073297	Stem 1	0.049
	CRR073298	Stem 2	0.032
	CRR073299	Stem 3	0.025
	CRR073300	Leaf 1	0.061
	CRR073301	Leaf 2	0.103
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.073
	CRR073304	Juvenile bud 2	0.170
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.737
	CRR073307	Third green 2	0.272
	CRR073308	Third green 3	0.729
	CRR073309	Second white 1	0.520
	CRR073310	Second white 2	0.328
	CRR073311	Second white 3	0.276
	CRR073312	Silver flowering 1	0.528
	CRR073313	Silver flowering 2	0.449
	CRR073314	Silver flowering 3	0.218
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.105
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.336
	CRR073319	Tawny withering 2	0.137
	CRR073320	Tawny withering 3	0.117