Detail information of GWHGAAZE027934


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010256902.10PREDICTED: protein IWS1 homolog [Nelumbo nucifera]
trEMBLtr|M5WBN4|M5WBN4_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ11167.1}
TAIR10AT1G32130.16E-105Transcription elongation factor (TFIIS) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene3207154132079059-
GWHAAZE00000008mRNA3207154132079059-
GWHAAZE00000008exon3207154132071639-
GWHAAZE00000008exon3207269832072851-
GWHAAZE00000008exon3207345132073516-
GWHAAZE00000008exon3207388432073975-
GWHAAZE00000008exon3207462532074690-
GWHAAZE00000008exon3207477132074848-
GWHAAZE00000008exon3207496932075031-
GWHAAZE00000008exon3207518132075310-
GWHAAZE00000008exon3207600432076220-
GWHAAZE00000008exon3207696632077083-
GWHAAZE00000008exon3207831432078683-
GWHAAZE00000008exon3207902232079059-
GWHAAZE00000008CDS3207902232079059-
GWHAAZE00000008CDS3207831432078683-
GWHAAZE00000008CDS3207696632077083-
GWHAAZE00000008CDS3207600432076220-
GWHAAZE00000008CDS3207518132075310-
GWHAAZE00000008CDS3207496932075031-
GWHAAZE00000008CDS3207477132074848-
GWHAAZE00000008CDS3207462532074690-
GWHAAZE00000008CDS3207388432073975-
GWHAAZE00000008CDS3207345132073516-
GWHAAZE00000008CDS3207269832072851-
GWHAAZE00000008CDS3207154132071639-
Transcript Sequence

Network for GWHGAAZE027934

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08711.12Med262883391.30E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyIWS1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.281
SRR3591706second leaf0.155
SRR3591707mature leaf0.804
SRR3591708Shoot apex0.259
SRR3591709Stem0.289
SRR3591710White floral bud3.476
SRR3591711White flower0.600
SRR3591712Green floral bud3.294
SRR3591713Yellow flower0.166
SRP173429 SRR8316895Juvenile bud stage 4.760
SRR8316896Juvenile bud stage 11.399
SRR8316897Juvenile bud stage 2.371
SRR8316894Third green stage 3.659
SRR8316900Third green stage 4.729
SRR8316901Third green stage 6.412
SRR8316898Complete white stage 0.029
SRR8316899Complete white stage 0.050
SRR8316903Complete white stage 0.086
SRR8316902Silver flowering stage0.049
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.012
SRR8316906Gold flowering stage 0.040
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control2.649
SRR6706287Light intensity 50%2.212
SRR6706288Light intensity 20%2.086
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.326
CNS0095593Slightly white alabastrum(diploid) 24.200
CNS0095594Slightly white alabastrum(diploid) 310.700
CNS0095595Whole white alabastrum(diploid) 26.217
CNS0095596Whole white alabastrum(diploid) 37.829
CNS0095597Whole white alabastrum(diploid) 44.760
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.163
CNS0095600Silvery flower (diploied) 30.086
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.047
CNS0095603Golden flower (diploid) 30.066
CNS0095604Slightly white alabastrum(tetraploid) 16.412
CNS0095605Slightly white alabastrum(tetraploid) 25.500
CNS0095606Slightly white alabastrum(tetraploid) 30.111
CNS0095607Whole white alabastrum(tetraploid) 14.674
CNS0095608Whole white alabastrum(tetraploid) 25.176
CNS0095609Whole white alabastrum(tetraploid) 32.956
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.173
CNS0095612Silvery flower (tetraploid) 30.254
CNS0095613Golden flower (tetraploid) 10.188
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.075
CRA001975CRR073297Stem 14.260
CRR073298Stem 24.342
CRR073299Stem 32.457
CRR073300Leaf 13.442
CRR073301Leaf 24.172
CRR073302Leaf 31.336
CRR073303Juvenile bud 11.153
CRR073304Juvenile bud 20.609
CRR073305Juvenile bud 30.043
CRR073306Third green 10.539
CRR073307Third green 20.529
CRR073308Third green 30.149
CRR073309Second white 10.000
CRR073310Second white 20.043
CRR073311Second white 30.027
CRR073312Silver flowering 10.029
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.146
CRR073315Gold flowering 10.189
CRR073316Gold flowering 20.068
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.243
CRR073319Tawny withering 20.125
CRR073320Tawny withering 30.279