Gene detail

Detail information of GWHGAAZE027937

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFO84070.1	0	alpha-amylase [Actinidia chinensis]
COG	YP_003951996.1	1E-92	alpha-amylase
Swissprot	tr\|P17859\|AMYA_VIGMU	0	Alpha-amylase (Precursor)
trEMBL	tr\|S4SLG7\|S4SLG7_ACTCH	0	Alpha-amylase {ECO:0000256\|RuleBase:RU361134}
TAIR10	AT4G25000.1	2E-143	alpha-amylase-like

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	32150149	32151668	+
GWHAAZE00000008	mRNA	32150149	32151668	+
GWHAAZE00000008	exon	32150149	32150281	+
GWHAAZE00000008	exon	32150522	32150940	+
GWHAAZE00000008	exon	32151029	32151316	+
GWHAAZE00000008	exon	32151417	32151668	+
GWHAAZE00000008	CDS	32150149	32150281	+
GWHAAZE00000008	CDS	32150522	32150940	+
GWHAAZE00000008	CDS	32151029	32151316	+
GWHAAZE00000008	CDS	32151417	32151668	+

Transcript Sequence
>GWHTAAZE027971 GGTTTTAACTGGGCATCAAATAAGAAGGCAGGAGGATGGTACAACTCACTGATGAATTCAGTCTCAGACATAGCTGCTGCTGGGGTTACCCATGTTTGGCTCCCTCCATCCTCTCAATCCGCAGCTCCCGAAGGATATTTGCCAGGAAGGTTATATGATCTCAACTCAAAATATGGGAACCAAGCCGAATTAAAAGCTTTAATTAATGCTTTCCGCGGTAAAGGTATAAAATGCGTAGCTGACATAGTAATAAACCACAGAACTGCAGAGAAGCAAGATAGCAGAGGGATATGGTGCATATTTGAAGGAGGAACAGCTGATGACCGTCTCGACTGGGGACCATCATTCATTTGCAAAGACGATACGCAATACTCTGATGGCCTAGGAAACCCCGATACTGGAAATGATTTTGGAGGCGCTCCCGATATTGACCATCTTAATCCTAGAGTGCAAAGAGAGTTATCCGATTGGATGAACTGGCTAAAGACTGAAATTGGATTTGCCGGGTGGCGATTTGACTTCACTAGGGGCTACTCTCCTAGTATCACTAAGGACCAACATCGTAATGAGTTGGCTCAGTGGGTCAAAAATAGCGGTGGGGTTGCGACCACGTTTGATTTCACAACCAAGGGAATTCTTCAGGCTGCGGTGAAGGGAGAATTGTGGAGAATGAAGGACTTCGAATGGAAATCCTCCGGGATGATTGGGATTTTACCGAGAAATGCTGTCACCTTTATTGACAATCACGATACCTACTCACAAAATTTATGGCCATTTCCATCAGAGAAAGTCCTTCAAGGATATGTCTATATTCTCACTCATCCGGGGGTTCCATCACTGTTCTATGATCACTTCTTTGAATGGGGACTGAAGGATGAAATTATCAAATTGACTAAAATTAGGGCAAGGAATGGGATCAGTGCAACAAGCAAAGTGAAAATCATGGTAGCTGATTCAGATTTGTACGTCGCAATGATCGATGACAAAGTTATTGCAAAGATTGGTCCAAAGTATGATGTTGGAAATATTATTCCACCAAATTTTCAAATTGCTTCCTCTGGGTTAGACTATGCTGTGTGGGAAAAAAAGTGA

Network for GWHGAAZE027937

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00128.25	Alpha-amylase	26	196	1.60E-13
PF07821.13	Alpha-amyl_C2	303	361	1.90E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01176	AMY, amyA, malS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Pancreatic secretion	map04972
		Carbohydrate digestion and absorption	map04973

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004556	molecular_function	alpha-amylase activity
GO:0005509	molecular_function	calcium ion binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.109
	SRR3591706	second leaf	0.022
	SRR3591707	mature leaf	0.150
	SRR3591708	Shoot apex	0.034
	SRR3591709	Stem	5.937
	SRR3591710	White floral bud	0.260
	SRR3591711	White flower	0.067
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.314
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.170
	SRR8316901	Third green stage	0.168
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.832
	SRR8316903	Complete white stage	0.051
	SRR8316902	Silver flowering stage	0.138
	SRR8316904	Silver flowering stage	0.129
	SRR8316905	Silver flowering stage	0.021
	SRR8316906	Gold flowering stage	0.037
	SRR8316907	Gold flowering stage	0.246
	SRR8316908	Gold flowering stage	0.045
SRP132670	SRR6706286	Control	0.704
	SRR6706287	Light intensity 50%	0.324
	SRR6706288	Light intensity 20%	0.264
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.263
	CNS0095593	Slightly white alabastrum(diploid) 2	0.515
	CNS0095594	Slightly white alabastrum(diploid) 3	0.058
	CNS0095595	Whole white alabastrum(diploid) 2	0.263
	CNS0095596	Whole white alabastrum(diploid) 3	0.057
	CNS0095597	Whole white alabastrum(diploid) 4	0.221
	CNS0095598	Silvery flower (diploied) 1	0.333
	CNS0095599	Silvery flower (diploied) 2	2.115
	CNS0095600	Silvery flower (diploied) 3	0.587
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.574
	CNS0095603	Golden flower (diploid) 3	1.162
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.031
	CNS0095610	Silvery flower (tetraploid) 1	0.068
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.172
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	1.052
	CNS0095615	Golden flower (tetraploid) 3	0.122
CRA001975	CRR073297	Stem 1	0.160
	CRR073298	Stem 2	0.223
	CRR073299	Stem 3	0.050
	CRR073300	Leaf 1	0.179
	CRR073301	Leaf 2	1.083
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.062
	CRR073305	Juvenile bud 3	0.389
	CRR073306	Third green 1	0.078
	CRR073307	Third green 2	0.059
	CRR073308	Third green 3	0.025
	CRR073309	Second white 1	0.136
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.007
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.003
	CRR073318	Tawny withering 1	2.673
	CRR073319	Tawny withering 2	0.721
	CRR073320	Tawny withering 3	2.176