Detail information of GWHGAAZE027954


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006352936.10PREDICTED: protein TOPLESS-like isoform X2 [Solanum tuberosum]
COGYP_003167824.19E-18WD-40 repeat-containing protein
Swissprottr|Q94AI7|TPL_ARATH0Protein TOPLESS
trEMBLtr|K4CMX0|K4CMX0_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g076030.2.1}
TAIR10AT1G15750.40Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene3237806432398875+
GWHAAZE00000008mRNA3237806432398875+
GWHAAZE00000008exon3237806432378143+
GWHAAZE00000008exon3237884232379021+
GWHAAZE00000008exon3237911732379230+
GWHAAZE00000008exon3237939932379557+
GWHAAZE00000008exon3237974632379923+
GWHAAZE00000008exon3238000432380124+
GWHAAZE00000008exon3238077032380879+
GWHAAZE00000008exon3238101032381148+
GWHAAZE00000008exon3238180932381918+
GWHAAZE00000008exon3238202832382100+
GWHAAZE00000008exon3238218232382255+
GWHAAZE00000008exon3238234032382435+
GWHAAZE00000008exon3238319532383290+
GWHAAZE00000008exon3238345432383581+
GWHAAZE00000008exon3238585732386091+
GWHAAZE00000008exon3238689832387065+
GWHAAZE00000008exon3238744732387554+
GWHAAZE00000008exon3238763432387780+
GWHAAZE00000008exon3238887832388988+
GWHAAZE00000008exon3238908432389266+
GWHAAZE00000008exon3238988732390015+
GWHAAZE00000008exon3239253032392625+
GWHAAZE00000008exon3239342532393610+
GWHAAZE00000008exon3239688032397052+
GWHAAZE00000008exon3239864132398875+
GWHAAZE00000008CDS3237806432378143+
GWHAAZE00000008CDS3237884232379021+
GWHAAZE00000008CDS3237911732379230+
GWHAAZE00000008CDS3237939932379557+
GWHAAZE00000008CDS3237974632379923+
GWHAAZE00000008CDS3238000432380124+
GWHAAZE00000008CDS3238077032380879+
GWHAAZE00000008CDS3238101032381148+
GWHAAZE00000008CDS3238180932381918+
GWHAAZE00000008CDS3238202832382100+
GWHAAZE00000008CDS3238218232382255+
GWHAAZE00000008CDS3238234032382435+
GWHAAZE00000008CDS3238319532383290+
GWHAAZE00000008CDS3238345432383581+
GWHAAZE00000008CDS3238585732386091+
GWHAAZE00000008CDS3238689832387065+
GWHAAZE00000008CDS3238744732387554+
GWHAAZE00000008CDS3238763432387780+
GWHAAZE00000008CDS3238887832388988+
GWHAAZE00000008CDS3238908432389266+
GWHAAZE00000008CDS3238988732390015+
GWHAAZE00000008CDS3239253032392625+
GWHAAZE00000008CDS3239342532393610+
GWHAAZE00000008CDS3239688032397052+
GWHAAZE00000008CDS3239864132398875+
Transcript Sequence

Network for GWHGAAZE027954

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD404474810.0001
PF00400.33WD409179500.0042
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf83.310
SRR3591706second leaf41.021
SRR3591707mature leaf32.017
SRR3591708Shoot apex59.555
SRR3591709Stem75.259
SRR3591710White floral bud68.994
SRR3591711White flower82.441
SRR3591712Green floral bud82.169
SRR3591713Yellow flower74.529
SRP173429 SRR8316895Juvenile bud stage 43.845
SRR8316896Juvenile bud stage 58.545
SRR8316897Juvenile bud stage 32.185
SRR8316894Third green stage 29.368
SRR8316900Third green stage 72.803
SRR8316901Third green stage 65.833
SRR8316898Complete white stage 16.809
SRR8316899Complete white stage 74.563
SRR8316903Complete white stage 42.267
SRR8316902Silver flowering stage25.495
SRR8316904Silver flowering stage42.578
SRR8316905Silver flowering stage20.140
SRR8316906Gold flowering stage 53.414
SRR8316907Gold flowering stage 52.590
SRR8316908Gold flowering stage 52.422
SRP132670SRR6706286Control51.984
SRR6706287Light intensity 50%59.455
SRR6706288Light intensity 20%62.832
CNP0000432CNS0095592Slightly white alabastrum(diploid) 134.217
CNS0095593Slightly white alabastrum(diploid) 234.675
CNS0095594Slightly white alabastrum(diploid) 330.007
CNS0095595Whole white alabastrum(diploid) 228.570
CNS0095596Whole white alabastrum(diploid) 325.592
CNS0095597Whole white alabastrum(diploid) 428.671
CNS0095598Silvery flower (diploied) 135.722
CNS0095599Silvery flower (diploied) 235.707
CNS0095600Silvery flower (diploied) 367.973
CNS0095601Golden flower (diploid) 132.592
CNS0095602Golden flower (diploid) 262.849
CNS0095603Golden flower (diploid) 357.533
CNS0095604Slightly white alabastrum(tetraploid) 138.145
CNS0095605Slightly white alabastrum(tetraploid) 231.614
CNS0095606Slightly white alabastrum(tetraploid) 380.608
CNS0095607Whole white alabastrum(tetraploid) 123.017
CNS0095608Whole white alabastrum(tetraploid) 219.835
CNS0095609Whole white alabastrum(tetraploid) 363.112
CNS0095610Silvery flower (tetraploid) 170.741
CNS0095611Silvery flower (tetraploid) 267.099
CNS0095612Silvery flower (tetraploid) 356.420
CNS0095613Golden flower (tetraploid) 133.822
CNS0095614Golden flower (tetraploid) 252.633
CNS0095615Golden flower (tetraploid) 349.122
CRA001975CRR073297Stem 168.068
CRR073298Stem 264.825
CRR073299Stem 359.376
CRR073300Leaf 177.572
CRR073301Leaf 266.218
CRR073302Leaf 356.721
CRR073303Juvenile bud 165.623
CRR073304Juvenile bud 243.682
CRR073305Juvenile bud 387.474
CRR073306Third green 119.582
CRR073307Third green 217.418
CRR073308Third green 322.424
CRR073309Second white 119.540
CRR073310Second white 227.673
CRR073311Second white 329.234
CRR073312Silver flowering 120.743
CRR073313Silver flowering 221.837
CRR073314Silver flowering 321.680
CRR073315Gold flowering 117.118
CRR073316Gold flowering 237.481
CRR073317Gold flowering 318.892
CRR073318Tawny withering 146.961
CRR073319Tawny withering 238.771
CRR073320Tawny withering 347.878