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Detail information of GWHGAAZE027954
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_006352936.1
0
PREDICTED: protein TOPLESS-like isoform X2 [Solanum tuberosum]
COG
YP_003167824.1
9E-18
WD-40 repeat-containing protein
Swissprot
tr|Q94AI7|TPL_ARATH
0
Protein TOPLESS
trEMBL
tr|K4CMX0|K4CMX0_SOLLC
0
Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g076030.2.1}
TAIR10
AT1G15750.4
0
Transducin family protein / WD-40 repeat family protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000008
gene
32378064
32398875
+
GWHAAZE00000008
mRNA
32378064
32398875
+
GWHAAZE00000008
exon
32378064
32378143
+
GWHAAZE00000008
exon
32378842
32379021
+
GWHAAZE00000008
exon
32379117
32379230
+
GWHAAZE00000008
exon
32379399
32379557
+
GWHAAZE00000008
exon
32379746
32379923
+
GWHAAZE00000008
exon
32380004
32380124
+
GWHAAZE00000008
exon
32380770
32380879
+
GWHAAZE00000008
exon
32381010
32381148
+
GWHAAZE00000008
exon
32381809
32381918
+
GWHAAZE00000008
exon
32382028
32382100
+
GWHAAZE00000008
exon
32382182
32382255
+
GWHAAZE00000008
exon
32382340
32382435
+
GWHAAZE00000008
exon
32383195
32383290
+
GWHAAZE00000008
exon
32383454
32383581
+
GWHAAZE00000008
exon
32385857
32386091
+
GWHAAZE00000008
exon
32386898
32387065
+
GWHAAZE00000008
exon
32387447
32387554
+
GWHAAZE00000008
exon
32387634
32387780
+
GWHAAZE00000008
exon
32388878
32388988
+
GWHAAZE00000008
exon
32389084
32389266
+
GWHAAZE00000008
exon
32389887
32390015
+
GWHAAZE00000008
exon
32392530
32392625
+
GWHAAZE00000008
exon
32393425
32393610
+
GWHAAZE00000008
exon
32396880
32397052
+
GWHAAZE00000008
exon
32398641
32398875
+
GWHAAZE00000008
CDS
32378064
32378143
+
GWHAAZE00000008
CDS
32378842
32379021
+
GWHAAZE00000008
CDS
32379117
32379230
+
GWHAAZE00000008
CDS
32379399
32379557
+
GWHAAZE00000008
CDS
32379746
32379923
+
GWHAAZE00000008
CDS
32380004
32380124
+
GWHAAZE00000008
CDS
32380770
32380879
+
GWHAAZE00000008
CDS
32381010
32381148
+
GWHAAZE00000008
CDS
32381809
32381918
+
GWHAAZE00000008
CDS
32382028
32382100
+
GWHAAZE00000008
CDS
32382182
32382255
+
GWHAAZE00000008
CDS
32382340
32382435
+
GWHAAZE00000008
CDS
32383195
32383290
+
GWHAAZE00000008
CDS
32383454
32383581
+
GWHAAZE00000008
CDS
32385857
32386091
+
GWHAAZE00000008
CDS
32386898
32387065
+
GWHAAZE00000008
CDS
32387447
32387554
+
GWHAAZE00000008
CDS
32387634
32387780
+
GWHAAZE00000008
CDS
32388878
32388988
+
GWHAAZE00000008
CDS
32389084
32389266
+
GWHAAZE00000008
CDS
32389887
32390015
+
GWHAAZE00000008
CDS
32392530
32392625
+
GWHAAZE00000008
CDS
32393425
32393610
+
GWHAAZE00000008
CDS
32396880
32397052
+
GWHAAZE00000008
CDS
32398641
32398875
+
Transcript Sequence
>GWHTAAZE027988 ATGTCATCGTTGAGTCGGGAACTAGTTTTCCTGATCCTGCAGTTCTTAGATGAGGAGAAATTCAAAGAAGCGGTCCACAAGTTGGAACAAGAGTCTGGGTTTTACTTCAATATGAAGTATTTCGAGGATCAAGTTCAGGCAGGTGAATGGGATGAAGTTGAACGCTACTTATGTGGGTTCACAAAGGTCGAGGACAACCGCTACTCAATGAAGATATTCTTCGAAATAAGAAAACAGAAGTATTTGGAAGCTCTTGATAGGAATGACCGGGCAAAAGCTGTTGAGATTCTTGTGAAAGATCTAAAGGTGTTTTCCTCTTTTAATGAAGAACTTTTCAAGGAGATCACCCAGTTACTTACCCTTGATAATTTTAGGCAGAATGAGCAGCTTTCCAAATATGGGGACACCAAATCGGCACGAAACATTATGTTGGTTGAACTTAAAAAGCTTATTGAAGCAAATCCATTGTTTCGCGACAAGCTTACATTTCCTACATTCAAAGCTTCACGATTGCGGACATTGATAAATCAGAGTCTTAATTGGCAGCATCAACTCTGCAAGAACCCACGTCCAAACCCTGATATCAAAACACTTTTCACTGATCATACTTGTGCTACTAGCAACGGAGCACGTGCTCCACCACCTACTAATGGTCCTATTGCTGGACCTGTTCCTAAAGCTGGGGTTTTTCCTCCTATTGGAGCCCATAATCCATTCCAGTCTGTTGTTTCTCCTTCCGCAAGTGCCATTGCAGGGTGGATGTCGAATGCCAACCCTTCTATGCCTCATGCTGCTGTTGCAGCTGGTCCCCCTGGTCTTGTGCAGACTCCTGCTGCATTCCTAAAGCACCCGAGGACACCTCCAGGTGCTCCTGGATTGGATTATCAAATGGCTGAATCAGAGCACTTGATGAAACGTATGCGTGCTGGCCAATCAGATGAGGTGTCCTTTTCTGGTTCTACACATCCTCCCAATATATACTCTCCCGATGACCTTCCAAAAACTGTTGTTCGGGTTCTTAACCAAGGCTCCAATGTAATGAGCATGGATTTCCATCCGCAGCAACAGACTGTTCTCTTAGTTGGAACGAACGTTGGTGACATTAGTATTTGGGAAGTTGGATCTCGAGAAAGGCTAGTGCATAAAACTTTCAAGGTTTGGGATATCTCAGCTTGTTCAATGCCATTGCAGCAGACAACTTTGGTGAAGGATGCTACAATATCTGTTAATCGATGCATATGGGGCCCAGATGGATCTATACTTGGTGTTGCTTTTTCAAAGCACATTGTTCAGATATATACTTACAACCCAGCTGGGGAATTAAGACAGCACTTGGAAATTGATGCTCATGCTGGTGGTGTAAATGATATAGCCTTTGCTCATCCTAATAAGCAACTGTGTATCGTTACTTGTGGTGATGATAAGACAATCAAGGTGTGGGATGCTGTATCTGGCCGGAGGCAGTATATATTTGAGGGTCACGAAGCTCCAGTCTATTCTGTCTGCCCTCATTATAAAGAGAATATTCAGTTCATTTTCTCCACTGCCATTGATGGAAAAATCAAAGCGTGGCTGTATGATTGTTTGGGATCAAGAGTAGATTATGATGCTCCTGGACTTTGGTGCACTACGATGTCATATAGTGCTGATGGAACCAGACTTTTCTCCTGTGGGACAAGCAAAGAAGGTGAGTCCCACCTGGTTGAGTGGAACGAGAGTGAAGGAGCAATCAAGAGGGCATATTCTGGCTTTAGGAAGCGCTCATCGGGTGTTGTGCAGTTTGACACAACAAGGAACCGTTTCTTAGTTGCTGGAGATGAATTTCAGATAAAGTTTTGGGATATGGACAATATCAACATTCTAACAGTTATTGATGCCGATGGTGGATTGCCTGCAAGCCCTAGACTGAGATTTAATAAGGAAGGGTCATTACTGGCTGTAACCACAAATGACAATGGAATTAAAGTCTTAGCAAATAATGACGGGCAACGCATGTTGAGGATGCTAGAGAGTAGAGCATTTGAAGGGTCTCGAGGTCATTCGGAAGCAGTCAATACTAAACCTCAAATTGCTGGTCCATTGGGTCCTATTACTAATGTTTCAGCCCCTATGCAACAAGTCCTAGAACGTTCTGATAGAATCCAACCCCAGATGTCCATTGGCAATCTTGCTAATGTGGAGAGCAGTAAGGTAGCTGATATTAAACCAAGGATTTTAGAGAATGTTGACAAAATTAAAAGCTGGAAGTTCCCCGATATAGTTGACTCAGCTCATCTGAAGGCTCTACGGTTGCCTGATCCTTTGACATCTAGCAAGGTTATGCGGTTGCTCTATACAAATTCTGGATTAGCCTTGCTCGCCCTTGCCTCTAATGCTGTTCATAAGCTGTGGAAATGGCAGCGCAGTGAACGCAATCCATCTGGAAAGTCCACTGCATCCATTGTACCACAGTTGTGGCAGCCTACAAACGGGGCCCTCATGTCTAATGATATAAGCGACACAAAACCTGCTGAAGAGTCGGGTGCATGCATTGCTTTATCTAAAAATGATTCTTATGTCATGTCAGCCTCGGGTGGGAAGGTCTCCTTGTTCAATATGATGACTTTTAAGGTGATGACAACTTTCATGCCTCCACCTCCGGCAGCTACCTATTTGGCTTTCCATCCTCAGGACAACAATATCATTGCCATAGGAATGGAGGATTCTACTATTCAAATTTATAATGTTAGGGTTGATGAGGTTAAAATCAAACTCAGGGGTCATCAGAAACAGATCACTGGGCTTGCATTTTCACAGACTTTGAATGTACTGGTATCTTCTGGAGCTGATGCACAGCTGTGTGTGTGGAGCATTGATGGGTGGGAGAAGAGGAAAGCAAGGTCTATACAAGCACCCCCCGGTCACCCTTCTCCTTTGGTAGGAGAAACTAAAGTTCAATTCCACAATGATCAGTCCCATCTACTCGTGGTTCATGACAGCCAAATTGCTGTTTATGATAGCCAACTTGAATGCCTTCGATTGTGGTCTCCAAGGGAGTCGCTTTCTGCAGCAATTTCGAGTGCAATATACTCATGTGATGGTCTGCTGGTGTTTACTGGATTTTGTGATGGTGCTATTGGTGTTTTTGATGCCGATTCTTTGAGGTTACGATGTCGGATTGCGTCTTCTGCTTATATATCTTCATCAATTAACAGCAGCAGTGGGACCGCGTTTCCTACTGTGATCGCATCACATCCATCGGATCCTAACCAGTTTGCGCTCGGAATGAGCGACGGCACAGTCCACGTGATCGAGCCGTCGGATGGAGAGAACAAGTGGGGTGGGAGTGGATCAACCCAACAAGATAATGGAGGAGGAGCTTCTTTACCTTCAGTTCCTTCAAATTCTGCCTTGAATAGTAGTCAGCCTTCTGAAACCCCCTCTAGGTGA
Network for GWHGAAZE027954
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF00400.33
WD40
447
481
0.0001
PF00400.33
WD40
917
950
0.0042
Protein Sequence
>GWHPAAZE027972 MSSLSRELVFLILQFLDEEKFKEAVHKLEQESGFYFNMKYFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLTFPTFKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCATSNGARAPPPTNGPIAGPVPKAGVFPPIGAHNPFQSVVSPSASAIAGWMSNANPSMPHAAVAAGPPGLVQTPAAFLKHPRTPPGAPGLDYQMAESEHLMKRMRAGQSDEVSFSGSTHPPNIYSPDDLPKTVVRVLNQGSNVMSMDFHPQQQTVLLVGTNVGDISIWEVGSRERLVHKTFKVWDISACSMPLQQTTLVKDATISVNRCIWGPDGSILGVAFSKHIVQIYTYNPAGELRQHLEIDAHAGGVNDIAFAHPNKQLCIVTCGDDKTIKVWDAVSGRRQYIFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDCLGSRVDYDAPGLWCTTMSYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRAYSGFRKRSSGVVQFDTTRNRFLVAGDEFQIKFWDMDNINILTVIDADGGLPASPRLRFNKEGSLLAVTTNDNGIKVLANNDGQRMLRMLESRAFEGSRGHSEAVNTKPQIAGPLGPITNVSAPMQQVLERSDRIQPQMSIGNLANVESSKVADIKPRILENVDKIKSWKFPDIVDSAHLKALRLPDPLTSSKVMRLLYTNSGLALLALASNAVHKLWKWQRSERNPSGKSTASIVPQLWQPTNGALMSNDISDTKPAEESGACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMPPPPAATYLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKIKLRGHQKQITGLAFSQTLNVLVSSGADAQLCVWSIDGWEKRKARSIQAPPGHPSPLVGETKVQFHNDQSHLLVVHDSQIAVYDSQLECLRLWSPRESLSAAISSAIYSCDGLLVFTGFCDGAIGVFDADSLRLRCRIASSAYISSSINSSSGTAFPTVIASHPSDPNQFALGMSDGTVHVIEPSDGENKWGGSGSTQQDNGGGASLPSVPSNSALNSSQPSETPSR
Gene family
Gene family
subfamily
Ubiquitin Family
DWD
KEGG pathway
KO
Enzyme
pathway
mapID
--
--
--
--
Gene Ontology
GO term
Ontology
Name
GO:0005515
molecular_function
protein binding
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
83.310
SRR3591706
second leaf
41.021
SRR3591707
mature leaf
32.017
SRR3591708
Shoot apex
59.555
SRR3591709
Stem
75.259
SRR3591710
White floral bud
68.994
SRR3591711
White flower
82.441
SRR3591712
Green floral bud
82.169
SRR3591713
Yellow flower
74.529
SRP173429
SRR8316895
Juvenile bud stage
43.845
SRR8316896
Juvenile bud stage
58.545
SRR8316897
Juvenile bud stage
32.185
SRR8316894
Third green stage
29.368
SRR8316900
Third green stage
72.803
SRR8316901
Third green stage
65.833
SRR8316898
Complete white stage
16.809
SRR8316899
Complete white stage
74.563
SRR8316903
Complete white stage
42.267
SRR8316902
Silver flowering stage
25.495
SRR8316904
Silver flowering stage
42.578
SRR8316905
Silver flowering stage
20.140
SRR8316906
Gold flowering stage
53.414
SRR8316907
Gold flowering stage
52.590
SRR8316908
Gold flowering stage
52.422
SRP132670
SRR6706286
Control
51.984
SRR6706287
Light intensity 50%
59.455
SRR6706288
Light intensity 20%
62.832
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
34.217
CNS0095593
Slightly white alabastrum(diploid) 2
34.675
CNS0095594
Slightly white alabastrum(diploid) 3
30.007
CNS0095595
Whole white alabastrum(diploid) 2
28.570
CNS0095596
Whole white alabastrum(diploid) 3
25.592
CNS0095597
Whole white alabastrum(diploid) 4
28.671
CNS0095598
Silvery flower (diploied) 1
35.722
CNS0095599
Silvery flower (diploied) 2
35.707
CNS0095600
Silvery flower (diploied) 3
67.973
CNS0095601
Golden flower (diploid) 1
32.592
CNS0095602
Golden flower (diploid) 2
62.849
CNS0095603
Golden flower (diploid) 3
57.533
CNS0095604
Slightly white alabastrum(tetraploid) 1
38.145
CNS0095605
Slightly white alabastrum(tetraploid) 2
31.614
CNS0095606
Slightly white alabastrum(tetraploid) 3
80.608
CNS0095607
Whole white alabastrum(tetraploid) 1
23.017
CNS0095608
Whole white alabastrum(tetraploid) 2
19.835
CNS0095609
Whole white alabastrum(tetraploid) 3
63.112
CNS0095610
Silvery flower (tetraploid) 1
70.741
CNS0095611
Silvery flower (tetraploid) 2
67.099
CNS0095612
Silvery flower (tetraploid) 3
56.420
CNS0095613
Golden flower (tetraploid) 1
33.822
CNS0095614
Golden flower (tetraploid) 2
52.633
CNS0095615
Golden flower (tetraploid) 3
49.122
CRA001975
CRR073297
Stem 1
68.068
CRR073298
Stem 2
64.825
CRR073299
Stem 3
59.376
CRR073300
Leaf 1
77.572
CRR073301
Leaf 2
66.218
CRR073302
Leaf 3
56.721
CRR073303
Juvenile bud 1
65.623
CRR073304
Juvenile bud 2
43.682
CRR073305
Juvenile bud 3
87.474
CRR073306
Third green 1
19.582
CRR073307
Third green 2
17.418
CRR073308
Third green 3
22.424
CRR073309
Second white 1
19.540
CRR073310
Second white 2
27.673
CRR073311
Second white 3
29.234
CRR073312
Silver flowering 1
20.743
CRR073313
Silver flowering 2
21.837
CRR073314
Silver flowering 3
21.680
CRR073315
Gold flowering 1
17.118
CRR073316
Gold flowering 2
37.481
CRR073317
Gold flowering 3
18.892
CRR073318
Tawny withering 1
46.961
CRR073319
Tawny withering 2
38.771
CRR073320
Tawny withering 3
47.878