Gene detail

Detail information of GWHGAAZE027969

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010278840.1	0	PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Nelumbo nucifera]
COG	NP_484327.1	3E-27	hypothetical protein all0283
Swissprot	tr\|Q9SZA4\|CDC21_ARATH	0	Cell division cycle 20.1, cofactor of APC complex
trEMBL	tr\|M1BL19\|M1BL19_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400047585}
TAIR10	AT4G33270.1	4E-145	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	32803849	32806498	+
GWHAAZE00000008	mRNA	32803849	32806498	+
GWHAAZE00000008	exon	32803849	32804118	+
GWHAAZE00000008	exon	32804198	32804288	+
GWHAAZE00000008	exon	32804381	32804484	+
GWHAAZE00000008	exon	32804917	32805501	+
GWHAAZE00000008	exon	32806358	32806498	+
GWHAAZE00000008	CDS	32803849	32804118	+
GWHAAZE00000008	CDS	32804198	32804288	+
GWHAAZE00000008	CDS	32804381	32804484	+
GWHAAZE00000008	CDS	32804917	32805501	+
GWHAAZE00000008	CDS	32806358	32806498	+

Transcript Sequence
>GWHTAAZE028003 TTGGACAGGTTCATCCCGAACCGAGCTGCAATGGATTTTGACTTTGCACATTACATGCTTATGGGTGGGAAAGTAGAAAAGGAAAACACTTCACCATGCTCCCCCTCCAAAGAAGCTTACAGGAAACAGCTTGCAGAAATATTTAACATCAATAGAACGAGGATACTTGCTTTTAAGAACAAGCCGCCCCCTTCGGCAGACGTTTTTCAAGAATTTTTCACATCTGTTCCTCAATCTATGCCAACCAAGCAGAGAAGATACATTCCCAAACTGTTGTTTGGTAATAACAGTCTTCAGAGAGGACTTTGGATGCCTGAGCTGTTAGATGACTTTTATCTGAATTTGCTGGATTGGGGTGGCAATGGGGCGGTTACAAGTGTTAGATGGTCACCTGATGCGAGACACCTTGCTGTTGGCTTGAACAATTCCCATGTCCAGCTCTGGGACTCTGTGACCAGCCGGTTGCTGAGGACTCTGCGAGAAGGCCACAGATCAAGGGTCGGTTCACTCGATTGGAACAATCACATCCTAACAACTGGAGGAATGGACAGCTTAATTATTAACAATGATGTAAGAATAAGATCCCACACAGTCTCAACATACAGGGGCCATAATCAAGAGGTTTGTGGGTTAAAATGGTCAACATCAGGTCAACAACTGGCAAGTGGAGGGAACGATAATCTTCTCTACATATGGAATTTATCAATGAATTCTAATCGTTCTTCTGCGAACCAATGGGTCCACCGCCTTGAAGACCACAGAGCCGCCGTTAAAGCTCTCTCGTGGTGTCCTTTCCAGAGCGATTTGCTTGCTTCTGGTGGTGGTTTAGGAGACCACTGTATTAAGTTTTGGAACACCCACAATGGAGTGTGCTTGAACTCCATAAATACAGGTTCGCAGGTTTGTTGCTTGCTTTGGAACAAACACGAGCGCGAGATTTTGAGCTCTCATGGTTTTGCTGATAACCAACTTACCCTTTGGAAGTATCCCTCTATGGTTAAGATTGCCGAGCTTTACGGTCATACATCAAGAGTTCTATACATGTCTCAGAGCCCAGACGGGTATACAGTTGCATCTGCAGCAAGTGACGAGACTCTGAGAATATGGAACGTTTTTGGGACTCCTGAACTCGAAAAGCCTGCACGCAAAACAAAGACAGAGCCATTTGCTAATGTTTCCCGCATCAGATGA

Network for GWHGAAZE027969

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12894.8	ANAPC4_WD40	121	174	1.80E-06
PF00400.33	WD40	197	233	7.70E-07
PF00400.33	WD40	247	285	0.1
PF00400.33	WD40	335	370	0.002

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K03363	CDC20	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.245
	SRR3591706	second leaf	0.334
	SRR3591707	mature leaf	0.105
	SRR3591708	Shoot apex	4.521
	SRR3591709	Stem	2.702
	SRR3591710	White floral bud	1.076
	SRR3591711	White flower	0.410
	SRR3591712	Green floral bud	1.673
	SRR3591713	Yellow flower	0.250
SRP173429	SRR8316895	Juvenile bud stage	2.677
	SRR8316896	Juvenile bud stage	4.417
	SRR8316897	Juvenile bud stage	0.466
	SRR8316894	Third green stage	1.481
	SRR8316900	Third green stage	4.320
	SRR8316901	Third green stage	4.053
	SRR8316898	Complete white stage	0.868
	SRR8316899	Complete white stage	2.016
	SRR8316903	Complete white stage	0.978
	SRR8316902	Silver flowering stage	1.142
	SRR8316904	Silver flowering stage	0.941
	SRR8316905	Silver flowering stage	0.467
	SRR8316906	Gold flowering stage	0.782
	SRR8316907	Gold flowering stage	0.773
	SRR8316908	Gold flowering stage	0.365
SRP132670	SRR6706286	Control	1.201
	SRR6706287	Light intensity 50%	1.665
	SRR6706288	Light intensity 20%	1.145
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.387
	CNS0095593	Slightly white alabastrum(diploid) 2	3.751
	CNS0095594	Slightly white alabastrum(diploid) 3	5.543
	CNS0095595	Whole white alabastrum(diploid) 2	4.531
	CNS0095596	Whole white alabastrum(diploid) 3	3.900
	CNS0095597	Whole white alabastrum(diploid) 4	5.475
	CNS0095598	Silvery flower (diploied) 1	2.826
	CNS0095599	Silvery flower (diploied) 2	1.741
	CNS0095600	Silvery flower (diploied) 3	0.334
	CNS0095601	Golden flower (diploid) 1	1.640
	CNS0095602	Golden flower (diploid) 2	0.505
	CNS0095603	Golden flower (diploid) 3	0.406
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.516
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.841
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.570
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.413
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.572
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.408
	CNS0095610	Silvery flower (tetraploid) 1	21.820
	CNS0095611	Silvery flower (tetraploid) 2	11.432
	CNS0095612	Silvery flower (tetraploid) 3	19.381
	CNS0095613	Golden flower (tetraploid) 1	7.890
	CNS0095614	Golden flower (tetraploid) 2	11.553
	CNS0095615	Golden flower (tetraploid) 3	9.471
CRA001975	CRR073297	Stem 1	6.011
	CRR073298	Stem 2	3.771
	CRR073299	Stem 3	1.888
	CRR073300	Leaf 1	3.959
	CRR073301	Leaf 2	3.412
	CRR073302	Leaf 3	0.652
	CRR073303	Juvenile bud 1	0.407
	CRR073304	Juvenile bud 2	0.186
	CRR073305	Juvenile bud 3	0.151
	CRR073306	Third green 1	0.147
	CRR073307	Third green 2	0.087
	CRR073308	Third green 3	0.400
	CRR073309	Second white 1	0.066
	CRR073310	Second white 2	0.004
	CRR073311	Second white 3	0.224
	CRR073312	Silver flowering 1	0.104
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.154
	CRR073316	Gold flowering 2	0.006
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	2.390
	CRR073319	Tawny withering 2	1.860
	CRR073320	Tawny withering 3	2.396