Gene detail

Detail information of GWHGAAZE027970

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009794506.1	0	PREDICTED: cell division cycle 20.1, cofactor of APC complex-like isoform X1 [Nicotiana sylvestris]
COG	YP_007159240.1	2E-16	WD40 repeat-containing protein
Swissprot	tr\|Q9SZA4\|CDC21_ARATH	5E-165	Cell division cycle 20.1, cofactor of APC complex
trEMBL	tr\|M1BL19\|M1BL19_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400047585}
TAIR10	AT4G33270.1	4E-128	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	32983001	32986478	+
GWHAAZE00000008	mRNA	32983001	32986478	+
GWHAAZE00000008	exon	32983001	32983085	+
GWHAAZE00000008	exon	32983350	32983402	+
GWHAAZE00000008	exon	32983826	32984095	+
GWHAAZE00000008	exon	32984195	32984464	+
GWHAAZE00000008	exon	32984896	32985079	+
GWHAAZE00000008	exon	32985186	32985323	+
GWHAAZE00000008	exon	32985412	32985476	+
GWHAAZE00000008	exon	32986338	32986478	+
GWHAAZE00000008	CDS	32983001	32983085	+
GWHAAZE00000008	CDS	32983350	32983402	+
GWHAAZE00000008	CDS	32983826	32984095	+
GWHAAZE00000008	CDS	32984195	32984464	+
GWHAAZE00000008	CDS	32984896	32985079	+
GWHAAZE00000008	CDS	32985186	32985323	+
GWHAAZE00000008	CDS	32985412	32985476	+
GWHAAZE00000008	CDS	32986338	32986478	+

Transcript Sequence
>GWHTAAZE028004 ATGGATGCAGGTAATCGATACAAGCAATGGCGACTTTCTCTGTTCGGTCCGACGCTAAAACGCAATAATTCGCGCGAATATGTATGGTTTAGTTTATTCCGTATTGTTCTGGTTTATTTATTAGACAATTCTTCTCCTTTGGACAGGTTCATCCCGAACCGAGCTGCAATGGATTTTGACTTTGCACATTACATGCTTATGGGTGGGAAAGTAGAAAAGGAAAACACTTCACCATGCTCCCCCTCCAAAGAAGCTTACAGGAAACAGCTTGCAGAAATATTTAACATCAATAGAACGAGGATACTTGCTTTTAAGAACAAGCCGCCCCCTTCGGCAGACGTTTTTCAAGAATTTTTCACATCTGTTCCTCAATCTATGCCAACCAAGCAGAGAAGATACATTCCCAAATCTTCAGAGAGGACTTTGGATGCGCCTGAGCTGTTAGATGACTTTTATCTGAATTTGCTGGATTGGGGTGGCAGTAATATTCTTGCTATAGCCCTTGGGAATGCAGTGTATCTTTGGGATGCTTCTGATGGGTCTATATCTGAACTTCTTGCCATTGGTGACGAGATGGGGCCGGTTACAAGTGTTAGATGGTCACCTGATGCGAGACACCTTGCTGTTGGCTTGAACAATTCCCATGTCCAGCTCTGGGACTCTGTGACCAGCCGGTTGCTGAGGACTCTGCGAGAAGGCCACAGATCAAGGGTCGGTTCACTCGATTGGAACAATCACATCCTAACAACTGGAGGAATGGACAGCTTAATTATTAACAATGATGTAAGAATAAGATCCCACACAGTCTCAACATACAGGGGCCATAATCAAGAGGTTTGTGGGTTAAAATGGTCAACATCAGACCACAGAGCCGCCGTTAAAGCTCTCTCGTGGTGTCCTTTCCAGAGCGATTTGCTTGCTTCTGGTGGTGGTTTAGGAGACCACTGTATTAAGTTTTGGAACACCCACAATGGAGTGTGCTTGAACTCCATAAATACAGTATCCTCTATGGTTAAGATTGCCGAGCTTTACGGTCATACATCAAGAGTTCTATACATGTCTCAGAGCCCAGACGGGTATACAGTTGCATCTGCAGCAAGTGACGAGACTCTGAGAATATGGAACGTTTTTGGGACTCCTGAACTCGAAAAGCCTGCACGCAAAACAAAGACAGAGCCATTTGCTAATGTTTCCCGCATCAGATGA

Network for GWHGAAZE027970

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12894.8	ANAPC4_WD40	190	245	1.60E-06
PF00400.33	WD40	268	321	0.014
PF00400.33	WD40	340	375	0.002

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K03363	CDC20	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.903
	SRR3591706	second leaf	0.478
	SRR3591707	mature leaf	0.102
	SRR3591708	Shoot apex	4.151
	SRR3591709	Stem	2.704
	SRR3591710	White floral bud	1.215
	SRR3591711	White flower	0.403
	SRR3591712	Green floral bud	1.561
	SRR3591713	Yellow flower	0.306
SRP173429	SRR8316895	Juvenile bud stage	2.595
	SRR8316896	Juvenile bud stage	5.180
	SRR8316897	Juvenile bud stage	0.369
	SRR8316894	Third green stage	1.736
	SRR8316900	Third green stage	3.229
	SRR8316901	Third green stage	4.325
	SRR8316898	Complete white stage	0.314
	SRR8316899	Complete white stage	1.750
	SRR8316903	Complete white stage	1.240
	SRR8316902	Silver flowering stage	0.724
	SRR8316904	Silver flowering stage	1.369
	SRR8316905	Silver flowering stage	0.404
	SRR8316906	Gold flowering stage	0.759
	SRR8316907	Gold flowering stage	0.928
	SRR8316908	Gold flowering stage	0.111
SRP132670	SRR6706286	Control	1.262
	SRR6706287	Light intensity 50%	2.077
	SRR6706288	Light intensity 20%	1.842
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.775
	CNS0095593	Slightly white alabastrum(diploid) 2	2.946
	CNS0095594	Slightly white alabastrum(diploid) 3	3.643
	CNS0095595	Whole white alabastrum(diploid) 2	4.513
	CNS0095596	Whole white alabastrum(diploid) 3	4.431
	CNS0095597	Whole white alabastrum(diploid) 4	3.394
	CNS0095598	Silvery flower (diploied) 1	2.342
	CNS0095599	Silvery flower (diploied) 2	1.058
	CNS0095600	Silvery flower (diploied) 3	0.317
	CNS0095601	Golden flower (diploid) 1	1.346
	CNS0095602	Golden flower (diploid) 2	0.285
	CNS0095603	Golden flower (diploid) 3	0.293
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.194
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.407
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.432
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.261
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.016
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.327
	CNS0095610	Silvery flower (tetraploid) 1	15.716
	CNS0095611	Silvery flower (tetraploid) 2	8.513
	CNS0095612	Silvery flower (tetraploid) 3	14.466
	CNS0095613	Golden flower (tetraploid) 1	5.827
	CNS0095614	Golden flower (tetraploid) 2	9.709
	CNS0095615	Golden flower (tetraploid) 3	7.361
CRA001975	CRR073297	Stem 1	4.691
	CRR073298	Stem 2	2.029
	CRR073299	Stem 3	0.960
	CRR073300	Leaf 1	3.052
	CRR073301	Leaf 2	3.197
	CRR073302	Leaf 3	0.324
	CRR073303	Juvenile bud 1	0.371
	CRR073304	Juvenile bud 2	0.139
	CRR073305	Juvenile bud 3	0.170
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.106
	CRR073308	Third green 3	0.068
	CRR073309	Second white 1	0.197
	CRR073310	Second white 2	0.004
	CRR073311	Second white 3	0.063
	CRR073312	Silver flowering 1	0.207
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.104
	CRR073317	Gold flowering 3	0.139
	CRR073318	Tawny withering 1	1.309
	CRR073319	Tawny withering 2	1.483
	CRR073320	Tawny withering 3	1.761