Gene detail

Detail information of GWHGAAZE027972

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009605690.1	2.2681E-103	PREDICTED: growth-regulating factor 4-like isoform X2 [Nicotiana tomentosiformis]
Swissprot	tr\|Q6AWY6\|GRF3_ORYSJ	4E-63	Growth-regulating factor 3
trEMBL	tr\|M1BL18\|M1BL18_SOLTU	1E-104	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400047584}
TAIR10	AT3G13960.1	1E-41	growth-regulating factor 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	33056888	33060432	+
GWHAAZE00000008	mRNA	33056888	33060432	+
GWHAAZE00000008	exon	33056888	33057092	+
GWHAAZE00000008	exon	33059472	33059868	+
GWHAAZE00000008	exon	33060420	33060432	+
GWHAAZE00000008	CDS	33056888	33057092	+
GWHAAZE00000008	CDS	33059472	33059868	+
GWHAAZE00000008	CDS	33060420	33060432	+

Transcript Sequence
>GWHTAAZE028006 ATGAGTTGTAGCACGTCTTCGGTGGTGGCGGCGGCCGGAGAGGGGTATAGGCCGCCGTTCACGGCGGTGCAGTGGCAGGAGCTGGAGCACCAAGCTTTGATATATAAGTATCTGGTGGCGGGTCTGCCGGTGCCGCCGGACCTCGTGGTTCCGATAAGGAGAAGCTTGGAAGCATTGTCTGCTAGGTTCTTTCATCACCCTAACTTGGGATATTGTTCATATTACGGGAAAAAATTTGACCCAGAGCCGGGTAGGTGCCGGAGGACAGATGGCAAAAAGTGGAGGTGCTCTAAAGACGCCTTTCCGGACTCCAAATATTGTGAGCGGCACATGCACCGTGGCCGTAACCGTTCAAGAAAGCCTGTGGAATCTCAATCTACTTCTACTTCTGCTCAGTCAGTGTCGACCACTCTGTCACATATTGCTACTGGTGGGAGCAGCGGCGGCAGCTTAGGAAGCTTCCAGAGTAGTGCCAGTGCAAGCTATCAAAACCTGCCACTGTACTCCATTGTTAATAATTCTGAAGGTCTTTGTTTCGGAAGTAATGCTTCGAAGCTGCAGATGGAAAATGTCCCTTATGGGATCAATAACAAAGAGTACAGTGATACCAAGTAA

Network for GWHGAAZE027972

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08880.12	QLQ	19	53	5.40E-17
PF08879.11	WRC	81	123	5.00E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.376
	SRR3591706	second leaf	2.709
	SRR3591707	mature leaf	1.046
	SRR3591708	Shoot apex	22.900
	SRR3591709	Stem	2.377
	SRR3591710	White floral bud	4.329
	SRR3591711	White flower	3.867
	SRR3591712	Green floral bud	0.411
	SRR3591713	Yellow flower	2.601
SRP173429	SRR8316895	Juvenile bud stage	4.217
	SRR8316896	Juvenile bud stage	2.782
	SRR8316897	Juvenile bud stage	0.796
	SRR8316894	Third green stage	0.658
	SRR8316900	Third green stage	1.196
	SRR8316901	Third green stage	0.380
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	3.574
	SRR8316903	Complete white stage	1.123
	SRR8316902	Silver flowering stage	0.170
	SRR8316904	Silver flowering stage	0.136
	SRR8316905	Silver flowering stage	0.107
	SRR8316906	Gold flowering stage	0.121
	SRR8316907	Gold flowering stage	0.638
	SRR8316908	Gold flowering stage	0.606
SRP132670	SRR6706286	Control	1.423
	SRR6706287	Light intensity 50%	1.290
	SRR6706288	Light intensity 20%	1.357
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.977
	CNS0095593	Slightly white alabastrum(diploid) 2	3.243
	CNS0095594	Slightly white alabastrum(diploid) 3	3.860
	CNS0095595	Whole white alabastrum(diploid) 2	2.886
	CNS0095596	Whole white alabastrum(diploid) 3	0.112
	CNS0095597	Whole white alabastrum(diploid) 4	2.673
	CNS0095598	Silvery flower (diploied) 1	10.114
	CNS0095599	Silvery flower (diploied) 2	6.898
	CNS0095600	Silvery flower (diploied) 3	4.662
	CNS0095601	Golden flower (diploid) 1	10.072
	CNS0095602	Golden flower (diploid) 2	8.168
	CNS0095603	Golden flower (diploid) 3	6.931
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.167
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.832
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.334
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.675
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.247
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.687
	CNS0095610	Silvery flower (tetraploid) 1	1.537
	CNS0095611	Silvery flower (tetraploid) 2	3.307
	CNS0095612	Silvery flower (tetraploid) 3	1.942
	CNS0095613	Golden flower (tetraploid) 1	0.279
	CNS0095614	Golden flower (tetraploid) 2	1.130
	CNS0095615	Golden flower (tetraploid) 3	0.412
CRA001975	CRR073297	Stem 1	5.968
	CRR073298	Stem 2	3.361
	CRR073299	Stem 3	3.837
	CRR073300	Leaf 1	1.094
	CRR073301	Leaf 2	1.146
	CRR073302	Leaf 3	0.624
	CRR073303	Juvenile bud 1	0.070
	CRR073304	Juvenile bud 2	0.454
	CRR073305	Juvenile bud 3	1.172
	CRR073306	Third green 1	0.016
	CRR073307	Third green 2	0.205
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.031
	CRR073310	Second white 2	0.066
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.146
	CRR073313	Silver flowering 2	0.442
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.187
	CRR073316	Gold flowering 2	0.085
	CRR073317	Gold flowering 3	0.460
	CRR073318	Tawny withering 1	3.038
	CRR073319	Tawny withering 2	4.700
	CRR073320	Tawny withering 3	2.269