Gene detail

Detail information of GWHGAAZE027979

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ACF05806.1	1.7991E-144	PAE [Litchi chinensis]
trEMBL	tr\|B3V945\|B3V945_LITCN	7E-145	PAE {ECO:0000313\|EMBL:ACF05806.1}
TAIR10	AT4G19420.1	1E-110	Pectinacetylesterase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	33192135	33196532	+
GWHAAZE00000008	mRNA	33192135	33196532	+
GWHAAZE00000008	exon	33192135	33192283	+
GWHAAZE00000008	exon	33192946	33193055	+
GWHAAZE00000008	exon	33193208	33193290	+
GWHAAZE00000008	exon	33193469	33193601	+
GWHAAZE00000008	exon	33193689	33193768	+
GWHAAZE00000008	exon	33193972	33194058	+
GWHAAZE00000008	exon	33194155	33194279	+
GWHAAZE00000008	exon	33194407	33194524	+
GWHAAZE00000008	exon	33194684	33194773	+
GWHAAZE00000008	exon	33195029	33195124	+
GWHAAZE00000008	exon	33195357	33195462	+
GWHAAZE00000008	exon	33196154	33196278	+
GWHAAZE00000008	exon	33196404	33196532	+
GWHAAZE00000008	CDS	33192135	33192283	+
GWHAAZE00000008	CDS	33192946	33193055	+
GWHAAZE00000008	CDS	33193208	33193290	+
GWHAAZE00000008	CDS	33193469	33193601	+
GWHAAZE00000008	CDS	33193689	33193768	+
GWHAAZE00000008	CDS	33193972	33194058	+
GWHAAZE00000008	CDS	33194155	33194279	+
GWHAAZE00000008	CDS	33194407	33194524	+
GWHAAZE00000008	CDS	33194684	33194773	+
GWHAAZE00000008	CDS	33195029	33195124	+
GWHAAZE00000008	CDS	33195357	33195462	+
GWHAAZE00000008	CDS	33196154	33196278	+
GWHAAZE00000008	CDS	33196404	33196532	+

Transcript Sequence
>GWHTAAZE028013 ATAAAACTCTCTTCACTTCTCTTCACCTCTACTCACTCACCTCCATTGCCAGTGCAATTCCAAGTTCTCTACTTCTCTCTCTCTTTAAACTTTTGCTTCCTTCATATAAGTAAAGCTGAGGCTCTATTCTTGAACTTCAAAAATCAAATAATGGAGAATACAAAACTATATGTACTGATCTCTTTTATAATCCTGATCGAAGTACAAGGCTCGGGTGTCGATATTACCTTTCTTGAGAGTGCAAAGGCGAAGGGAGCAGTCTGTTTGGATGGGAGTGCACCTGCATACCAGTTTGATAAGGGTGTTGGGGCAGGAGCCAACAATTGGTTGGTTCATATACAGGGTGGAGGATGGTGTACATCACTTGAATCTTGCCATAACCGTACGCGTCCCTCAAGCGACATGGGTTCCTCTCATTATATGAGGAAATCTAAGTTCTCTGGGATTTTGAGCCACAAGAAAAAGTTTAACTCTAACTTCTACAATTGGAATAGGATCCTTGTTCGCTATTGTGATGGATCATCCTTTACCGGAGATGTTGAAGAAGTCGAGCCTAAATTTGGACTCCACTTTAGAGGTGCGCGGGTTTTCGATGCCATCATGGAGGACCTTTTAGCTAGAGGAATGAAGAATGCGTCCAATGCTCTGCTCTCTGGATGTTCAGCTGGTGGGTTGGCGTCGATCTTGCATTGTGATAAATTCCGAGCTCTTGTACCTACCTGTGCAAGAGTGAAATGCGTATCAGACGCTGGTTATTTTATCCACGTGAAAGATATCTCAGGAAGATATCACTTTGAAGAAAAATATTTTGATCGAGTGGTTAAACTACATGTATTCTCTCTCTCTCTCTCTCAAATGTTACTCAACTATATATGTTTAATGTTTGGATCATCTAAGAATTTGCCCCTATCATGCACTTCAAAGATGAAAGATGGTCTGGTAAGAATGGTTCTCTTTGTATTATGGATGACTTTGTGCTTTTATCCACAATATGCCGCCCCACATATCCAGACACCACTTTTTATTATAAATTCGGTGTATGATATATACCAGGTCAGCCTTTCATTTATAATATCTAATATTTTGGCACCAACTGCAAATGGTCGTAATGGCTCCTGGTTTGAGTGCCAGTACAACTATAAGAAGTGCTCACATAGTCAAATCAGAACATTGCAAGCACTTTCGAGCGGACTGGCTAACAGCTCATCTACAGGAATGTTCATAAATTCCTGTTATACCCACTGCCAATCTGAATTTCGAAAGAAGTGGTATGGAGATCCTGCATCAAAGATGGATAAAAAGGCAATCGGAGAGGCGGTGGGTGACTGGTTTTATGACCGAACTACATTCCAACATATAGATGACAAACATTTGAACTTAATCCAAAAGAGCCAAATCCAAAGAATAATTATACATGGGGAGGTTAGGTAA

Network for GWHGAAZE027979

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03283.14	PAE	68	449	1.80E-126

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19882	NOTUM	Wnt signaling pathway	map04310

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.999
	SRR3591706	second leaf	0.503
	SRR3591707	mature leaf	0.246
	SRR3591708	Shoot apex	1.951
	SRR3591709	Stem	0.446
	SRR3591710	White floral bud	12.639
	SRR3591711	White flower	3.524
	SRR3591712	Green floral bud	25.177
	SRR3591713	Yellow flower	1.537
SRP173429	SRR8316895	Juvenile bud stage	3.615
	SRR8316896	Juvenile bud stage	2.867
	SRR8316897	Juvenile bud stage	1.058
	SRR8316894	Third green stage	1.798
	SRR8316900	Third green stage	1.826
	SRR8316901	Third green stage	2.174
	SRR8316898	Complete white stage	0.088
	SRR8316899	Complete white stage	5.339
	SRR8316903	Complete white stage	1.091
	SRR8316902	Silver flowering stage	0.049
	SRR8316904	Silver flowering stage	0.135
	SRR8316905	Silver flowering stage	0.015
	SRR8316906	Gold flowering stage	0.226
	SRR8316907	Gold flowering stage	0.017
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	2.355
	SRR6706287	Light intensity 50%	2.537
	SRR6706288	Light intensity 20%	2.144
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.578
	CNS0095593	Slightly white alabastrum(diploid) 2	4.180
	CNS0095594	Slightly white alabastrum(diploid) 3	5.199
	CNS0095595	Whole white alabastrum(diploid) 2	2.504
	CNS0095596	Whole white alabastrum(diploid) 3	6.042
	CNS0095597	Whole white alabastrum(diploid) 4	1.353
	CNS0095598	Silvery flower (diploied) 1	1.077
	CNS0095599	Silvery flower (diploied) 2	0.500
	CNS0095600	Silvery flower (diploied) 3	0.225
	CNS0095601	Golden flower (diploid) 1	0.473
	CNS0095602	Golden flower (diploid) 2	0.250
	CNS0095603	Golden flower (diploid) 3	0.228
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.306
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.401
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.980
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.786
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.586
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.170
	CNS0095610	Silvery flower (tetraploid) 1	0.800
	CNS0095611	Silvery flower (tetraploid) 2	2.573
	CNS0095612	Silvery flower (tetraploid) 3	0.848
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.958
	CNS0095615	Golden flower (tetraploid) 3	0.139
CRA001975	CRR073297	Stem 1	1.446
	CRR073298	Stem 2	1.722
	CRR073299	Stem 3	0.606
	CRR073300	Leaf 1	1.780
	CRR073301	Leaf 2	1.047
	CRR073302	Leaf 3	0.581
	CRR073303	Juvenile bud 1	0.695
	CRR073304	Juvenile bud 2	0.038
	CRR073305	Juvenile bud 3	0.941
	CRR073306	Third green 1	0.044
	CRR073307	Third green 2	0.028
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.270
	CRR073316	Gold flowering 2	0.502
	CRR073317	Gold flowering 3	0.083
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.214