Gene detail

Detail information of GWHGAAZE028009

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ABJ90470.1	0	beta-ketoacyl-ACP synthase III [Jatropha curcas]
COG	YP_007053262.1	3E-125	3-oxoacyl-(acyl-carrier-protein) synthase III
Swissprot	tr\|P49244\|FABH1_CUPWR	0	3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic (Precursor)
trEMBL	tr\|Q000L1\|Q000L1_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP25634.1}
TAIR10	AT1G62640.2	2E-159	3-ketoacyl-acyl carrier protein synthase III

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	33696894	33703427	-
GWHAAZE00000008	mRNA	33696894	33703427	-
GWHAAZE00000008	exon	33696894	33697145	-
GWHAAZE00000008	exon	33698545	33698776	-
GWHAAZE00000008	exon	33698874	33698938	-
GWHAAZE00000008	exon	33699591	33699709	-
GWHAAZE00000008	exon	33699816	33699921	-
GWHAAZE00000008	exon	33700814	33700950	-
GWHAAZE00000008	exon	33701762	33701910	-
GWHAAZE00000008	exon	33703240	33703427	-
GWHAAZE00000008	CDS	33703240	33703427	-
GWHAAZE00000008	CDS	33701762	33701910	-
GWHAAZE00000008	CDS	33700814	33700950	-
GWHAAZE00000008	CDS	33699816	33699921	-
GWHAAZE00000008	CDS	33699591	33699709	-
GWHAAZE00000008	CDS	33698874	33698938	-
GWHAAZE00000008	CDS	33698545	33698776	-
GWHAAZE00000008	CDS	33696894	33697145	-

Transcript Sequence
>GWHTAAZE028043 ATGGCAAAGGCATCCAGTTTCTTTACACCTACGGTTCCCATTCTTAGAAGAAGAAATTCACCTTCTAAATTCATATATGGATATGGGTTTTATTCCCCTGAGGGAATCTCCATAAGGGTTCGGTGCTCCAGCACTACTGTGGGTGCTGACAATCTTGATTCTACAGCTACCCAATCTCGAGTACCCAGGCTTGTCAGTAAAGGCTGCAAACTAGTTGGCTGTGGCTCTGCAGTACCAAAATTTCAGCTTTCAAATGATGATCTTGCAAAATTCGTCGAAACTTCTGATGAATGGATATCTGTTCGCACTGGAATTCGTAACCGACGAGTTCTTACAGGGAATGATAGCTTAACGGGTCTGGCTACAGAAGCTGCAAAGAAAGCTCTTGAGATGGCAAAGGTTGATCCTGATGATGTGGACCTAGTTTTGTTGTGTACTTCTACTCCCGAGGATCTATTTGGCAGTGCCCCTCAGATCCAAAGAGCACTAGGCTGTAAAAAGAATCCACTGGCTTACGATATTACAGCTGCTTGTAGCGGATTCGTCATGGGTCTAGTCTCGGGTTCTTGTTACATTAGAGGAGGGGGATTTAAGAACGTTCTTGTGATTGGTGCTGATGCACTTTCGCGTTATGTTGATTGGACGGATAGAGGGACCTGTATTCTCTTTGGAGATGCTGCTGGTGCCATCTTACTACAGGCCTGCGATAGCGAGGACGACGGCTTATTTAGTTTTGACTTGCATAGTGACGGCAATGGCCGAAGACACTTAAATGCCGCCATCAAAGAAGATGAAGCCCATCATGATGATGCTTTAGGTTCTTCCAATGGTTCAGTTTTGGGTTTTCCCCCGAGGCGAGCCTCTTGTCCAGGCATTTATATGAACGGGAAAGAGGTCTTTCGATTCGCTGTTCGGTTTGTGCCAAAGTCGATTAAGTTGGCACTACAAAAGGCTGGACTCACTGGTTCTAGGATTGATTGGTTACTGCTGCATCAGTATGTACAAACCATGACCTACGATGTGCAGGCAAACCAGAGGATCATTGACAAGGTGGCAACACAGTTACAAGTCCCCTCAGAGCGGGTCATATCGAACTTGGCGAATTACGGCAACACGAGCGCTGCGTCCATTCCGTTGGCACTGGACGAGGCTGTTAGGAGCGGGAAGGTGAAGCCAGGCCATATGATTGCAGCTGCAGGTTTTGGGGCTGGTCTTACGTGGGGTTCTGTTATTCTTAGATGGGGATAA

Network for GWHGAAZE028009

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08545.11	ACP_syn_III	172	251	5.40E-28
PF08541.11	ACP_syn_III_C	315	414	2.30E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00648	fabH	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0004315	molecular_function	3-oxoacyl-[acyl-carrier-protein] synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.298
	SRR3591706	second leaf	11.893
	SRR3591707	mature leaf	2.374
	SRR3591708	Shoot apex	9.609
	SRR3591709	Stem	1.212
	SRR3591710	White floral bud	13.435
	SRR3591711	White flower	5.448
	SRR3591712	Green floral bud	12.650
	SRR3591713	Yellow flower	6.751
SRP173429	SRR8316895	Juvenile bud stage	9.345
	SRR8316896	Juvenile bud stage	14.527
	SRR8316897	Juvenile bud stage	5.384
	SRR8316894	Third green stage	4.834
	SRR8316900	Third green stage	23.482
	SRR8316901	Third green stage	25.451
	SRR8316898	Complete white stage	7.611
	SRR8316899	Complete white stage	14.846
	SRR8316903	Complete white stage	7.744
	SRR8316902	Silver flowering stage	3.615
	SRR8316904	Silver flowering stage	3.802
	SRR8316905	Silver flowering stage	2.639
	SRR8316906	Gold flowering stage	3.880
	SRR8316907	Gold flowering stage	4.790
	SRR8316908	Gold flowering stage	3.637
SRP132670	SRR6706286	Control	14.852
	SRR6706287	Light intensity 50%	19.656
	SRR6706288	Light intensity 20%	24.461
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.250
	CNS0095593	Slightly white alabastrum(diploid) 2	14.098
	CNS0095594	Slightly white alabastrum(diploid) 3	11.740
	CNS0095595	Whole white alabastrum(diploid) 2	11.323
	CNS0095596	Whole white alabastrum(diploid) 3	12.964
	CNS0095597	Whole white alabastrum(diploid) 4	9.331
	CNS0095598	Silvery flower (diploied) 1	2.543
	CNS0095599	Silvery flower (diploied) 2	3.721
	CNS0095600	Silvery flower (diploied) 3	3.672
	CNS0095601	Golden flower (diploid) 1	1.674
	CNS0095602	Golden flower (diploid) 2	1.541
	CNS0095603	Golden flower (diploid) 3	1.515
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.934
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.816
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.319
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.602
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.776
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.015
	CNS0095610	Silvery flower (tetraploid) 1	3.790
	CNS0095611	Silvery flower (tetraploid) 2	2.313
	CNS0095612	Silvery flower (tetraploid) 3	4.395
	CNS0095613	Golden flower (tetraploid) 1	3.259
	CNS0095614	Golden flower (tetraploid) 2	3.373
	CNS0095615	Golden flower (tetraploid) 3	1.475
CRA001975	CRR073297	Stem 1	21.219
	CRR073298	Stem 2	14.020
	CRR073299	Stem 3	9.133
	CRR073300	Leaf 1	22.525
	CRR073301	Leaf 2	26.470
	CRR073302	Leaf 3	17.600
	CRR073303	Juvenile bud 1	11.309
	CRR073304	Juvenile bud 2	7.419
	CRR073305	Juvenile bud 3	11.651
	CRR073306	Third green 1	7.514
	CRR073307	Third green 2	5.011
	CRR073308	Third green 3	6.752
	CRR073309	Second white 1	0.595
	CRR073310	Second white 2	1.953
	CRR073311	Second white 3	1.034
	CRR073312	Silver flowering 1	0.883
	CRR073313	Silver flowering 2	1.368
	CRR073314	Silver flowering 3	1.132
	CRR073315	Gold flowering 1	7.352
	CRR073316	Gold flowering 2	8.008
	CRR073317	Gold flowering 3	5.902
	CRR073318	Tawny withering 1	2.623
	CRR073319	Tawny withering 2	2.117
	CRR073320	Tawny withering 3	3.383