Gene detail

Detail information of GWHGAAZE028035

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP07213.1	0	unnamed protein product [Coffea canephora]
COG	YP_001659897.1	3E-65	cytochrome P450
Swissprot	tr\|Q949P1\|ABAH1_ARATH	0	Abscisic acid 8'-hydroxylase 1
trEMBL	tr\|A0A068UHZ2\|A0A068UHZ2_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_25 {ECO:0000313\|EMBL:CDP07213.1}
TAIR10	AT4G19230.1	0	cytochrome P450, family 707, subfamily A, polypeptide 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	35375114	35377181	+
GWHAAZE00000008	mRNA	35375114	35377181	+
GWHAAZE00000008	exon	35375114	35375316	+
GWHAAZE00000008	exon	35375420	35375738	+
GWHAAZE00000008	exon	35375946	35376332	+
GWHAAZE00000008	exon	35376487	35376670	+
GWHAAZE00000008	exon	35376779	35376885	+
GWHAAZE00000008	exon	35377038	35377181	+
GWHAAZE00000008	CDS	35375114	35375316	+
GWHAAZE00000008	CDS	35375420	35375738	+
GWHAAZE00000008	CDS	35375946	35376332	+
GWHAAZE00000008	CDS	35376487	35376670	+
GWHAAZE00000008	CDS	35376779	35376885	+
GWHAAZE00000008	CDS	35377038	35377181	+

Transcript Sequence
>GWHTAAZE028069 ATGGAGCTAACAACAATTTTGTGCTCCTTTGCTTTCATTTTCTCTATCTATCTCCTCCACTCTCTCCTCAAATTCGCCGGCTCAGGCCGCGGTGGCCGGAATTTGCCCCTCCCTCCGGGGACTATGGGGTGGCCTTACATCGGAGAAACCTTCCAACTCTACTCAAATAACCCAAATGTGTTCTTTGCCTCAAAAGTTAAAAAGTTTGGTTCTATTTTCAAGACTCACATATTGGGGTGTCCTTGTGTGATGATTTCGAGCCCTGAGGCTGCTAAGCTTGTACTCGTGACGAAAGCCAATCTCTTTAAGCCTACATTTCCGGCTAGTAAAGAGAGGATGTTGGGAAAACAAGCAATTTTCTTTCACCAAGGAGATTATCACACCAAATTGAGAAGGATTGTTCTTCGATCTTTCATGCCTGAAGCAATCAGAAGGATGGTGCCCGATGTTGAATCCATAGCCATTGATTCTCTGCGGTCGTTCGAAGGACGGTTGATCAACACTTTCCAAGAAATGAAAACATTCACATTCAACGTCGCCTTACTTTCCATATTCGGAAAGGACGAGATTCTATACAGAGAAGATCTCAAAAGGTGCTACTACATTCTCGAAAAAGGTTACAATTCTATGCCCATTAATCTACCCGGTACGCTCTTCCACAAATCAATGAAGGCGCGAAAAGAACTGGCTCAAATTGTCGCAAAAATCCTCTCACTAAGAAGAGAAATGAACGAGGATCGACACGATTTGCTAGGGTCATTCATGGGTGACAAAGAAGGCCTCACGGACGAACAAATCGCCGACAACATAATTGGTGTCATCTTCGCGGCTAGGGATACTACGGCAAGTGTCATAACGTGGATCGTCAAGTACCTAGGCGAAAACCCGAGTGTTCTACAAGCTGTCACGAAAGAGCAAGAGGCAATATTGAAGGAAAAGGCGGAGTGTAGTGAAGAAAATAACAGTAAGGCTTTGACTTGGGCAGATACCAAGAAGATGTCTTTAACTACAAGGGTTATTCAAGAAACACTCAGAGTTGCTTCAATCCTATCTTTCACATTTAGAGAAGCGGTTGAAGATGTTGAATTTGAAGGATACTTTATACCAAAAGGATGGAAAGTTTTACCCCTCTTCAGAAACATTCACCACAGTGCAGATAATTTTGCAGAACCAGAGAAGTTTGATCCATCAAGATTTGAGGTTGCACCAAAGCCCAATACATTTATGCCATTTGGCAATGGGACCCACTCATGTCCAGGGAATGAGCTAGCTAAATTGGAGATTTTGGTCTTTATACATCATTTGACTACGAAGTACAGGTGGGTGACACCTTATTTCTCCTAA

Network for GWHGAAZE028035

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	38	443	2.60E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09843	CYP707A	Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.791
	SRR3591706	second leaf	0.613
	SRR3591707	mature leaf	0.496
	SRR3591708	Shoot apex	0.230
	SRR3591709	Stem	3.286
	SRR3591710	White floral bud	2.753
	SRR3591711	White flower	1.603
	SRR3591712	Green floral bud	0.380
	SRR3591713	Yellow flower	3.678
SRP173429	SRR8316895	Juvenile bud stage	1.056
	SRR8316896	Juvenile bud stage	0.551
	SRR8316897	Juvenile bud stage	1.315
	SRR8316894	Third green stage	0.365
	SRR8316900	Third green stage	0.343
	SRR8316901	Third green stage	0.307
	SRR8316898	Complete white stage	1.179
	SRR8316899	Complete white stage	2.404
	SRR8316903	Complete white stage	1.468
	SRR8316902	Silver flowering stage	7.518
	SRR8316904	Silver flowering stage	5.127
	SRR8316905	Silver flowering stage	1.123
	SRR8316906	Gold flowering stage	7.469
	SRR8316907	Gold flowering stage	7.004
	SRR8316908	Gold flowering stage	10.762
SRP132670	SRR6706286	Control	1.032
	SRR6706287	Light intensity 50%	1.643
	SRR6706288	Light intensity 20%	1.991
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.866
	CNS0095593	Slightly white alabastrum(diploid) 2	1.184
	CNS0095594	Slightly white alabastrum(diploid) 3	0.617
	CNS0095595	Whole white alabastrum(diploid) 2	0.368
	CNS0095596	Whole white alabastrum(diploid) 3	0.085
	CNS0095597	Whole white alabastrum(diploid) 4	1.379
	CNS0095598	Silvery flower (diploied) 1	2.178
	CNS0095599	Silvery flower (diploied) 2	0.306
	CNS0095600	Silvery flower (diploied) 3	1.984
	CNS0095601	Golden flower (diploid) 1	0.867
	CNS0095602	Golden flower (diploid) 2	1.729
	CNS0095603	Golden flower (diploid) 3	1.451
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.024
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.016
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.053
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.026
	CNS0095610	Silvery flower (tetraploid) 1	0.167
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.060
	CNS0095613	Golden flower (tetraploid) 1	0.115
	CNS0095614	Golden flower (tetraploid) 2	0.427
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.751
	CRR073298	Stem 2	0.889
	CRR073299	Stem 3	0.728
	CRR073300	Leaf 1	1.500
	CRR073301	Leaf 2	0.803
	CRR073302	Leaf 3	1.564
	CRR073303	Juvenile bud 1	1.818
	CRR073304	Juvenile bud 2	0.920
	CRR073305	Juvenile bud 3	1.388
	CRR073306	Third green 1	0.230
	CRR073307	Third green 2	1.745
	CRR073308	Third green 3	2.749
	CRR073309	Second white 1	0.206
	CRR073310	Second white 2	0.852
	CRR073311	Second white 3	1.347
	CRR073312	Silver flowering 1	9.640
	CRR073313	Silver flowering 2	5.291
	CRR073314	Silver flowering 3	5.660
	CRR073315	Gold flowering 1	4.286
	CRR073316	Gold flowering 2	10.908
	CRR073317	Gold flowering 3	2.329
	CRR073318	Tawny withering 1	24.240
	CRR073319	Tawny withering 2	35.352
	CRR073320	Tawny withering 3	37.437