Detail information of GWHGAAZE028038


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010688627.13.73648E-15PREDICTED: F-box protein At3g08750-like [Beta vulgaris subsp. vulgaris]
Swissprottr|Q9LUU4|FB149_ARATH0.000000001Putative F-box protein At3g17270
trEMBLtr|B9MXG9|B9MXG9_POPTR6E-15Uncharacterized protein {ECO:0000313|EMBL:EEE94348.2}
TAIR10AT3G17270.10.00000007F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene3545690035457217+
GWHAAZE00000008mRNA3545690035457217+
GWHAAZE00000008exon3545690035457217+
GWHAAZE00000008CDS3545690035457217+
Transcript Sequence

Network for GWHGAAZE028038

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box1442.70E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.515
SRR3591711White flower0.000
SRR3591712Green floral bud0.822
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.749
SRR8316896Juvenile bud stage 1.461
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.456
SRR8316900Third green stage 1.030
SRR8316901Third green stage 1.541
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.072
SRR8316905Silver flowering stage0.065
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.357
SRR6706287Light intensity 50%0.194
SRR6706288Light intensity 20%0.214
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.138
CNS0095593Slightly white alabastrum(diploid) 20.744
CNS0095594Slightly white alabastrum(diploid) 32.361
CNS0095595Whole white alabastrum(diploid) 21.716
CNS0095596Whole white alabastrum(diploid) 33.702
CNS0095597Whole white alabastrum(diploid) 41.264
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.551
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.002
CNS0095604Slightly white alabastrum(tetraploid) 11.104
CNS0095605Slightly white alabastrum(tetraploid) 21.167
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.747
CNS0095608Whole white alabastrum(tetraploid) 22.212
CNS0095609Whole white alabastrum(tetraploid) 30.989
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.061
CNS0095612Silvery flower (tetraploid) 30.268
CNS0095613Golden flower (tetraploid) 10.214
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.171
CRA001975CRR073297Stem 10.547
CRR073298Stem 21.415
CRR073299Stem 30.340
CRR073300Leaf 11.196
CRR073301Leaf 20.180
CRR073302Leaf 30.647
CRR073303Juvenile bud 10.020
CRR073304Juvenile bud 20.595
CRR073305Juvenile bud 30.000
CRR073306Third green 10.130
CRR073307Third green 20.087
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.484
CRR073313Silver flowering 20.900
CRR073314Silver flowering 30.190
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.170
CRR073319Tawny withering 20.041
CRR073320Tawny withering 30.131