Gene detail

Detail information of GWHGAAZE028051

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010644481.1	PREDICTED: AP-4 complex subunit epsilon [Vitis vinifera]
Swissprot	tr\|Q8L7A9\|AP4E_ARATH	AP-4 complex subunit epsilon
trEMBL	tr\|F6HJ24\|F6HJ24_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB52221.1}
TAIR10	AT1G31730.1	Adaptin family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	36120231	36140417	+
GWHAAZE00000008	mRNA	36120231	36140417	+
GWHAAZE00000008	exon	36120231	36120797	+
GWHAAZE00000008	exon	36121718	36121903	+
GWHAAZE00000008	exon	36126503	36126718	+
GWHAAZE00000008	exon	36126960	36127070	+
GWHAAZE00000008	exon	36130900	36131097	+
GWHAAZE00000008	exon	36131595	36131726	+
GWHAAZE00000008	exon	36136680	36136736	+
GWHAAZE00000008	exon	36136867	36136983	+
GWHAAZE00000008	exon	36137243	36137320	+
GWHAAZE00000008	exon	36138387	36138530	+
GWHAAZE00000008	exon	36139401	36140417	+
GWHAAZE00000008	CDS	36120231	36120797	+
GWHAAZE00000008	CDS	36121718	36121903	+
GWHAAZE00000008	CDS	36126503	36126718	+
GWHAAZE00000008	CDS	36126960	36127070	+
GWHAAZE00000008	CDS	36130900	36131097	+
GWHAAZE00000008	CDS	36131595	36131726	+
GWHAAZE00000008	CDS	36136680	36136736	+
GWHAAZE00000008	CDS	36136867	36136983	+
GWHAAZE00000008	CDS	36137243	36137320	+
GWHAAZE00000008	CDS	36138387	36138530	+
GWHAAZE00000008	CDS	36139401	36140417	+

Transcript Sequence
>GWHTAAZE028085 ATGGGCTCCCAAGGTGGATTCGGCCAGTCCAAGGAGTTCCTCGACCTCGTTAAGTCAATCGGCGAGGCCCGATCCAAGGCTGAGGAGGACCGCATCGTCATCCACGAGATCGAAACCCTAAAACGCCGAATCACGGAGCCGGACATACCTAAGAGGAAACTAAAGGAGTATATTATTCGGCTTGTTTACATCGAGATGCTAGGGCACGATGCCAGCTTCGGCTATATACATGCGGTGAAGATGACGCACGACGATTCGTTGCTGTTGAAACGGACTGGGTATTTGGCGGTCACGCTGTTTTTGAACGAGGATCATGATCTGATTATACTGATTGTTAATACGATACAGAAGGACTTGAAATCGGATAATTATCTGGTGGTTTGCGCCGCGTTGAATGCGGTTTGTAGGTTGATTAATGAGGAGACTATACCGGCTGTGCTTCCGCAGGTTGTTGAGCTTTTGGGGCACTCGAAGGAGGCGGTTAGGAAGAAGGCGGTTATGGCGCTTCATCGGTTTTATCAGCGGTCTCCATCTTCTGTCAATCATCTTGTTCCCAATTTTCGGAAGCGGCTTTGTGATAATGATCCAGGGGTTATGGGTGCAACCCTTTGCCCTCTCTTTGATCTGATCATGATAGACGTTAGTTCTCATAAGGACTTAGTTGTCAGTTTTGTAAGCATTCTAAAACAAGTAGCTGAGCGGAGATTGCCGAAGACTTATGATTATCATCAGATGCCTGCTCCTTTCATTCAGATCAAGTTGCTTAAAATTCTGGCATTACTGGGGAACGGTGACAAACAGGCTAGTGAGCACATGTATACTGTTGTGGGTGACATTATGAGGAAGTCTGACTCAACAAGCAACATAGGAAACGCCATTCTTTATGAATGCATATGCTGTGTTTCCTCTATACAACCCAATCCTAAGTTATTAGAATCTGCAGCTGATGCCATTTCCAAATTTTTGAAGAGTGACAGTCATAATTTAAAGTATATGGGCATCGATGCCCTTAGTCGGTTGATAAAGACGAGTCCCGAAATTGCTGAACAGCACCAACTGGCTGTGATCGATTGCTTAGAGGATCCAGATGACACTCTGAAGAGAAAAACATTTGAGCTGTTATATAAAATGACAAAGTCCAACAATGTGGAAGTAATTGTGGACCGTATGATTGATTACATGATAAGCATTAATGATAATCATTACAAAACTGAAATAGCATCCAGATGCGTTGAGCTTGCAGAGCAGTTTGCACCAAGCAACCATTGGTTCATACAGACCATGAACAAAGTGTTTGAGCATGCGGGAGATTTAGTGAATGTTAAGGTGGCGCATAACTTGATGAAGTTAATTGCTGAAGGATTTGGAGAGGACGATGATACTGCAGATAGTCAACTCAGATCCTCGGCTGTGGAATCATATTTGCGCTTAGTTGGAGAGCCCAAACTTCCATCTGCATTTTTACAGGTCATTTGTTGGGTCTTGGGGGAATATGGAACTGCAGATGGAAAATATTCTGCTTCCTATATTACTGGAAAGCTCTGTGACGTGGCAGAGGCACATTCAAGTGATGACATTGTCAAGGGATATGCAGTAACCGCACTCCTGAAAATATACTCATTTGAAATAGCAGCTGGGAGAAAATTTGACATGCTACCTGAGTGCCAATCCTTGATTGAAGAATTATCGGCCTCCCACTCAACAGATCTGCAGCAACGTGCTTATGAACTTCAAGCACTCGTTGGGTTGGATGCTCAAGCTGTTGAGAATGTAATGCCAATGGATGCAAGCTGTAAAGAGATCGAGATTGATAAAAGCCTTTCGTTCCTCAATAGCTATGTGCAAGAGGCTTTGGAAAAGGGTGCTCAACCATATATCCCCGAGAGTGAGCGATCTGGTTCATCAAATATCAGCAACTTTAGAAACCTCGACCACCATGAAACTTCAACTCATGCTCTTAGGTTCGAGGCCTACGAGGTTCCAAAACCCACTATACCAACAAGAGCACCCACTACAATATCACCCACAACCGAACTTGTACCAGTCCCCGAGCCATCTTATGCCAGGGAGATCCACCAGGCTCCATCAGCACCATCCGTTTCTGATACCCAATCATCAGAACTTAAGCTACGGCTTGATGGGGTTCAGAGGAAGTGGGGCCGGCCAACCACTAATCCATCTCCTCCTCCACCGTCTGATCCCCTCAAAACCGTGAATGGGGCCACACAACCCGTTGCGGCTGCCAGCGTAAAATCAACGACACGAGATTCGAGAAGGGCCCAAGTCGAGGTTTCACCCGAAAGGCAAAAGCTTGCCGCATCCCTGTTTGGTGGAACATCATCAAAACCTGAGAAGAGACATTCGACGTCTGTGGGCCACAAGGGTTCCAAAACAAACAACGTTGCTAAAGGACCAACAACCCCTTCTCAACCAACTCAGCCGCCACCTGACTTGCTTGATTTGGGTGAGCCTGTGGTTACTAGTACCGCCCCATCCGTGGACCCATTCAAGCAACTAGATTGGCTTGTGGACGTAACCAACGATCCTACATCTATAAATTCTAGTTCCACAGGCCCCACCTATTCCTCTGATATTACGTCTCTATACGCAGATATGTTAATAACTGGGGAGACTAGTGTTGGTCCAAATGATGCCAATCTTGTTTCGCAATCGCCTGGTGGAAGTACGATTATTCCCCCGGTGGTCCAGTCGAACAAGGGTCCAAACCCAAAAGGTTCTTTAGAAAGGGACGCACTTGTGAGGCAGATGGGGGTGAACCCCACAAGTCAGAATCCCAACTTGTTCAGGGACTTGCTTGGTTAG

Network for GWHGAAZE028051

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01602.21	Adaptin_N	43	581	1.60E-83

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12400	AP4E1	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0015031	biological_process	protein transport
GO:0030117	cellular_component	membrane coat
GO:0030124	cellular_component	AP-4 adaptor complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.836
	SRR3591706	second leaf	22.965
	SRR3591707	mature leaf	16.580
	SRR3591708	Shoot apex	24.144
	SRR3591709	Stem	31.322
	SRR3591710	White floral bud	37.166
	SRR3591711	White flower	33.354
	SRR3591712	Green floral bud	38.214
	SRR3591713	Yellow flower	29.114
SRP173429	SRR8316895	Juvenile bud stage	16.833
	SRR8316896	Juvenile bud stage	22.176
	SRR8316897	Juvenile bud stage	9.509
	SRR8316894	Third green stage	9.537
	SRR8316900	Third green stage	27.919
	SRR8316901	Third green stage	26.995
	SRR8316898	Complete white stage	12.108
	SRR8316899	Complete white stage	35.554
	SRR8316903	Complete white stage	24.278
	SRR8316902	Silver flowering stage	12.169
	SRR8316904	Silver flowering stage	19.259
	SRR8316905	Silver flowering stage	8.248
	SRR8316906	Gold flowering stage	28.697
	SRR8316907	Gold flowering stage	27.809
	SRR8316908	Gold flowering stage	28.841
SRP132670	SRR6706286	Control	37.355
	SRR6706287	Light intensity 50%	38.316
	SRR6706288	Light intensity 20%	38.448
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.806
	CNS0095593	Slightly white alabastrum(diploid) 2	15.471
	CNS0095594	Slightly white alabastrum(diploid) 3	13.321
	CNS0095595	Whole white alabastrum(diploid) 2	12.468
	CNS0095596	Whole white alabastrum(diploid) 3	11.201
	CNS0095597	Whole white alabastrum(diploid) 4	14.774
	CNS0095598	Silvery flower (diploied) 1	16.458
	CNS0095599	Silvery flower (diploied) 2	15.960
	CNS0095600	Silvery flower (diploied) 3	38.574
	CNS0095601	Golden flower (diploid) 1	14.937
	CNS0095602	Golden flower (diploid) 2	39.732
	CNS0095603	Golden flower (diploid) 3	37.690
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.249
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.361
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.009
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.486
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.079
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.516
	CNS0095610	Silvery flower (tetraploid) 1	33.849
	CNS0095611	Silvery flower (tetraploid) 2	35.362
	CNS0095612	Silvery flower (tetraploid) 3	40.582
	CNS0095613	Golden flower (tetraploid) 1	15.150
	CNS0095614	Golden flower (tetraploid) 2	27.770
	CNS0095615	Golden flower (tetraploid) 3	36.662
CRA001975	CRR073297	Stem 1	33.412
	CRR073298	Stem 2	33.317
	CRR073299	Stem 3	30.223
	CRR073300	Leaf 1	39.242
	CRR073301	Leaf 2	32.228
	CRR073302	Leaf 3	25.650
	CRR073303	Juvenile bud 1	31.140
	CRR073304	Juvenile bud 2	26.816
	CRR073305	Juvenile bud 3	46.131
	CRR073306	Third green 1	27.973
	CRR073307	Third green 2	22.796
	CRR073308	Third green 3	27.744
	CRR073309	Second white 1	24.252
	CRR073310	Second white 2	26.335
	CRR073311	Second white 3	30.983
	CRR073312	Silver flowering 1	27.630
	CRR073313	Silver flowering 2	32.400
	CRR073314	Silver flowering 3	27.448
	CRR073315	Gold flowering 1	13.038
	CRR073316	Gold flowering 2	22.119
	CRR073317	Gold flowering 3	19.178
	CRR073318	Tawny withering 1	29.203
	CRR073319	Tawny withering 2	17.468
	CRR073320	Tawny withering 3	26.257