Detail information of GWHGAAZE028064


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002270708.10PREDICTED: uncharacterized protein LOC100249371 isoform X1 [Vitis vinifera]
Swissprottr|Q93Z92|RING4_ARATH2E-10E3 ubiquitin-protein ligase At4g11680
trEMBLtr|F6HJ39|F6HJ39_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB52236.1}
TAIR10AT5G45290.16E-69RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene3696707136974823-
GWHAAZE00000008mRNA3696707136974823-
GWHAAZE00000008exon3697452836974823-
GWHAAZE00000008exon3697195936973002-
GWHAAZE00000008exon3697085336971050-
GWHAAZE00000008exon3696967736969831-
GWHAAZE00000008exon3696866036968770-
GWHAAZE00000008exon3696746236967543-
GWHAAZE00000008exon3696719036967248-
GWHAAZE00000008exon3696707136967113-
GWHAAZE00000008five_prime_UTR3697470836974823-
GWHAAZE00000008CDS3697452836974707-
GWHAAZE00000008CDS3697195936973002-
GWHAAZE00000008CDS3697085336971050-
GWHAAZE00000008CDS3696967736969831-
GWHAAZE00000008CDS3696866036968770-
GWHAAZE00000008CDS3696746236967543-
GWHAAZE00000008CDS3696719036967248-
GWHAAZE00000008CDS3696707136967113-
Transcript Sequence

Network for GWHGAAZE028064

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_25265601.90E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.709
SRR3591706second leaf10.540
SRR3591707mature leaf12.896
SRR3591708Shoot apex20.681
SRR3591709Stem16.186
SRR3591710White floral bud8.404
SRR3591711White flower5.946
SRR3591712Green floral bud14.293
SRR3591713Yellow flower1.656
SRP173429 SRR8316895Juvenile bud stage 7.531
SRR8316896Juvenile bud stage 10.051
SRR8316897Juvenile bud stage 4.124
SRR8316894Third green stage 8.079
SRR8316900Third green stage 17.830
SRR8316901Third green stage 18.200
SRR8316898Complete white stage 4.529
SRR8316899Complete white stage 18.719
SRR8316903Complete white stage 8.745
SRR8316902Silver flowering stage5.482
SRR8316904Silver flowering stage4.771
SRR8316905Silver flowering stage1.927
SRR8316906Gold flowering stage 3.871
SRR8316907Gold flowering stage 3.920
SRR8316908Gold flowering stage 5.352
SRP132670SRR6706286Control11.806
SRR6706287Light intensity 50%14.084
SRR6706288Light intensity 20%16.546
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.071
CNS0095593Slightly white alabastrum(diploid) 212.781
CNS0095594Slightly white alabastrum(diploid) 38.424
CNS0095595Whole white alabastrum(diploid) 210.824
CNS0095596Whole white alabastrum(diploid) 311.731
CNS0095597Whole white alabastrum(diploid) 413.063
CNS0095598Silvery flower (diploied) 19.440
CNS0095599Silvery flower (diploied) 27.877
CNS0095600Silvery flower (diploied) 36.117
CNS0095601Golden flower (diploid) 15.754
CNS0095602Golden flower (diploid) 26.097
CNS0095603Golden flower (diploid) 35.418
CNS0095604Slightly white alabastrum(tetraploid) 114.329
CNS0095605Slightly white alabastrum(tetraploid) 212.442
CNS0095606Slightly white alabastrum(tetraploid) 326.907
CNS0095607Whole white alabastrum(tetraploid) 112.228
CNS0095608Whole white alabastrum(tetraploid) 211.210
CNS0095609Whole white alabastrum(tetraploid) 317.609
CNS0095610Silvery flower (tetraploid) 14.767
CNS0095611Silvery flower (tetraploid) 24.274
CNS0095612Silvery flower (tetraploid) 34.491
CNS0095613Golden flower (tetraploid) 12.206
CNS0095614Golden flower (tetraploid) 23.059
CNS0095615Golden flower (tetraploid) 32.779
CRA001975CRR073297Stem 114.801
CRR073298Stem 216.494
CRR073299Stem 314.407
CRR073300Leaf 118.508
CRR073301Leaf 215.537
CRR073302Leaf 316.503
CRR073303Juvenile bud 116.164
CRR073304Juvenile bud 211.191
CRR073305Juvenile bud 316.969
CRR073306Third green 13.740
CRR073307Third green 23.813
CRR073308Third green 34.450
CRR073309Second white 11.904
CRR073310Second white 22.131
CRR073311Second white 32.379
CRR073312Silver flowering 11.576
CRR073313Silver flowering 21.629
CRR073314Silver flowering 31.619
CRR073315Gold flowering 113.494
CRR073316Gold flowering 223.401
CRR073317Gold flowering 317.669
CRR073318Tawny withering 118.973
CRR073319Tawny withering 215.012
CRR073320Tawny withering 324.267