Gene detail

Detail information of GWHGAAZE028065

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15690.1	9.39086E-81	unnamed protein product [Coffea canephora]
trEMBL	tr\|B3V945\|B3V945_LITCN	2E-82	PAE {ECO:0000313\|EMBL:ACF05806.1}
TAIR10	AT4G19420.1	1E-64	Pectinacetylesterase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	37070167	37080264	+
GWHAAZE00000008	mRNA	37070167	37080264	+
GWHAAZE00000008	exon	37070167	37070287	+
GWHAAZE00000008	exon	37070526	37070667	+
GWHAAZE00000008	exon	37072759	37072825	+
GWHAAZE00000008	exon	37074490	37074786	+
GWHAAZE00000008	exon	37075983	37076036	+
GWHAAZE00000008	exon	37076130	37076207	+
GWHAAZE00000008	exon	37076995	37077088	+
GWHAAZE00000008	exon	37077774	37077919	+
GWHAAZE00000008	exon	37079955	37080264	+
GWHAAZE00000008	CDS	37070167	37070287	+
GWHAAZE00000008	CDS	37070526	37070667	+
GWHAAZE00000008	CDS	37072759	37072825	+
GWHAAZE00000008	CDS	37074490	37074786	+
GWHAAZE00000008	CDS	37075983	37076036	+
GWHAAZE00000008	CDS	37076130	37076207	+
GWHAAZE00000008	CDS	37076995	37077088	+
GWHAAZE00000008	CDS	37077774	37077919	+
GWHAAZE00000008	CDS	37079955	37080092	+
GWHAAZE00000008	three_prime_UTR	37080093	37080264	+

Transcript Sequence
>GWHTAAZE028099 ACGGTCAATGCAAGATTCAGCGAATGGCTATCCATACTCGTTTGTTTACTAATCGGGCTGAAAATAGAAGCCTTGAAGGTCAACATAACTAAACTTACTAGTGCTGTGGCAAAAGGAGCAGGCCTAATTGGTTTTCATATCCTAAATGTGCTTACAATTTCATATGGTGCAGTTTGTTTGGATGGGAGTGCACCAGCCTACGTTCTTGATAGGGGATTTGGAGAAGGAGCAAACAGTTGGTTGGTTCATCTTCAGGTTGGTCCAGTCTTTGTTCGGTATTGTGATGGGTCATCATATACCGGAGATGTGGAAAAGGTTGATGAGGTTAAGGGGATTAAACTTCACTACAGAGGTGAAAGGGTTTTTGATGCCATTATGGAAGACATTTTATCAAAAGGAATGAAAAACGCAACAAATGTATGTCCCTTTCTCTCTGCCCCCCCCTCTCCCCCTTCCTTCTTGGAAAAAAGACTCATAATAACTTGTTACTATAGGTTCTTCTCTCCGGGACTTCAGCTGGTGGATTGGCTACCATATTGCATTGCGACAAATTTCGAGCGCTCCTACCCACAAGTACAAGAGTTAAATGCTTTTCAGACGGGGGATTCTTTCTCCATACGTAAGCTTGGATCAGTTAAGAATTTGCCTCCGTCGTGCACTTCAAAAATGAACCCAGAATTGTGCATTTACCCGCAACATGTTGTGCCACATATGCAGACGCCACTTTTCATTCTAAATTCAGCATATGATCCCTTCCAGATACAAAACATTTTGGCACCAAGTGATCCCATCTGGTCTACATGCTTGTTCAATATAACCGAATGTGCACCACGTGAAGCCAAAAGATGGCCAGAGTTCAGGTTAAAGTTAATAAATGCATTGAAGGAACTTCCCTATTCTTCAACTAGAGGATTGTTTATCAACTCTTGCCACATCCATGGCCAAGCCGAACGCCAGGTCTCATGGCTTGGAGACCCTTCATCAAAGTTGAATAACAAGGCAATTGGAGAGGCAGTTGGCGATTGGTTTTACGACAGAACTGTGTTCCAACAGATAGATAACGAACACATCTTACCACAAACGTGTGCACCCAATCCACACGAGCCCAATAAGGCCAATCATTATAATTGGGAGTAAATACTTTTAAAGAATCAATGAATATCAACTATTCTAATACAATCGCACTCTTTACTTGCTCTTGTTTATAGACCTGCGAAAGCGGGTCATTTCATTTTGTGTTTGTCTGCATGAATATTCCGAGTAAATGACTGTCATGGCTCTTAAACTATCACACTTGTACCTCTTTGGC

Network for GWHGAAZE028065

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03283.14	PAE	54	87	6.90E-11
PF03283.14	PAE	89	140	3.30E-15
PF03283.14	PAE	208	347	8.20E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19882	NOTUM	Wnt signaling pathway	map04310

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.109
	SRR3591706	second leaf	0.457
	SRR3591707	mature leaf	0.709
	SRR3591708	Shoot apex	3.011
	SRR3591709	Stem	3.298
	SRR3591710	White floral bud	361.769
	SRR3591711	White flower	19.170
	SRR3591712	Green floral bud	363.388
	SRR3591713	Yellow flower	11.663
SRP173429	SRR8316895	Juvenile bud stage	26.461
	SRR8316896	Juvenile bud stage	91.244
	SRR8316897	Juvenile bud stage	45.119
	SRR8316894	Third green stage	41.379
	SRR8316900	Third green stage	202.684
	SRR8316901	Third green stage	207.714
	SRR8316898	Complete white stage	0.260
	SRR8316899	Complete white stage	3.093
	SRR8316903	Complete white stage	0.738
	SRR8316902	Silver flowering stage	3.402
	SRR8316904	Silver flowering stage	8.629
	SRR8316905	Silver flowering stage	2.132
	SRR8316906	Gold flowering stage	1.696
	SRR8316907	Gold flowering stage	1.084
	SRR8316908	Gold flowering stage	1.033
SRP132670	SRR6706286	Control	135.103
	SRR6706287	Light intensity 50%	139.121
	SRR6706288	Light intensity 20%	119.373
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	261.532
	CNS0095593	Slightly white alabastrum(diploid) 2	210.940
	CNS0095594	Slightly white alabastrum(diploid) 3	297.334
	CNS0095595	Whole white alabastrum(diploid) 2	507.146
	CNS0095596	Whole white alabastrum(diploid) 3	602.886
	CNS0095597	Whole white alabastrum(diploid) 4	632.976
	CNS0095598	Silvery flower (diploied) 1	16.575
	CNS0095599	Silvery flower (diploied) 2	49.340
	CNS0095600	Silvery flower (diploied) 3	14.260
	CNS0095601	Golden flower (diploid) 1	18.905
	CNS0095602	Golden flower (diploid) 2	10.422
	CNS0095603	Golden flower (diploid) 3	10.925
	CNS0095604	Slightly white alabastrum(tetraploid) 1	471.278
	CNS0095605	Slightly white alabastrum(tetraploid) 2	556.735
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.195
	CNS0095607	Whole white alabastrum(tetraploid) 1	883.692
	CNS0095608	Whole white alabastrum(tetraploid) 2	923.021
	CNS0095609	Whole white alabastrum(tetraploid) 3	406.948
	CNS0095610	Silvery flower (tetraploid) 1	8.256
	CNS0095611	Silvery flower (tetraploid) 2	43.642
	CNS0095612	Silvery flower (tetraploid) 3	102.189
	CNS0095613	Golden flower (tetraploid) 1	16.208
	CNS0095614	Golden flower (tetraploid) 2	4.540
	CNS0095615	Golden flower (tetraploid) 3	59.788
CRA001975	CRR073297	Stem 1	29.560
	CRR073298	Stem 2	31.346
	CRR073299	Stem 3	11.497
	CRR073300	Leaf 1	120.177
	CRR073301	Leaf 2	74.878
	CRR073302	Leaf 3	36.673
	CRR073303	Juvenile bud 1	94.006
	CRR073304	Juvenile bud 2	60.892
	CRR073305	Juvenile bud 3	9.160
	CRR073306	Third green 1	32.990
	CRR073307	Third green 2	40.609
	CRR073308	Third green 3	37.517
	CRR073309	Second white 1	1.543
	CRR073310	Second white 2	8.861
	CRR073311	Second white 3	7.878
	CRR073312	Silver flowering 1	41.122
	CRR073313	Silver flowering 2	36.986
	CRR073314	Silver flowering 3	19.400
	CRR073315	Gold flowering 1	33.807
	CRR073316	Gold flowering 2	12.659
	CRR073317	Gold flowering 3	6.624
	CRR073318	Tawny withering 1	36.377
	CRR073319	Tawny withering 2	44.286
	CRR073320	Tawny withering 3	42.151