Detail information of GWHGAAZE028069


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010644675.14.08497E-51PREDICTED: carbon catabolite repressor protein 4 homolog 4-like [Vitis vinifera]
Swissprottr|A8MS41|CCR4D_ARATH2E-44Carbon catabolite repressor protein 4 homolog 4
trEMBLtr|D7TFE7|D7TFE7_VITVI2E-51Putative uncharacterized protein {ECO:0000313|EMBL:CBI29220.3}
TAIR10AT1G31500.31E-37DNAse I-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene3711045537111924+
GWHAAZE00000008mRNA3711045537111924+
GWHAAZE00000008exon3711045537110469+
GWHAAZE00000008exon3711084737111028+
GWHAAZE00000008exon3711174137111924+
GWHAAZE00000008CDS3711045537110469+
GWHAAZE00000008CDS3711084737111028+
GWHAAZE00000008CDS3711174137111924+
Transcript Sequence

Network for GWHGAAZE028069

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12603CNOT6, CCR4 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.945
SRR3591706second leaf8.265
SRR3591707mature leaf3.501
SRR3591708Shoot apex11.133
SRR3591709Stem7.358
SRR3591710White floral bud12.764
SRR3591711White flower12.127
SRR3591712Green floral bud15.067
SRR3591713Yellow flower14.376
SRP173429 SRR8316895Juvenile bud stage 9.951
SRR8316896Juvenile bud stage 16.525
SRR8316897Juvenile bud stage 12.346
SRR8316894Third green stage 6.350
SRR8316900Third green stage 24.063
SRR8316901Third green stage 22.924
SRR8316898Complete white stage 11.686
SRR8316899Complete white stage 22.573
SRR8316903Complete white stage 14.418
SRR8316902Silver flowering stage13.101
SRR8316904Silver flowering stage15.494
SRR8316905Silver flowering stage6.340
SRR8316906Gold flowering stage 26.878
SRR8316907Gold flowering stage 28.944
SRR8316908Gold flowering stage 32.859
SRP132670SRR6706286Control17.527
SRR6706287Light intensity 50%19.530
SRR6706288Light intensity 20%20.635
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.348
CNS0095593Slightly white alabastrum(diploid) 214.676
CNS0095594Slightly white alabastrum(diploid) 312.088
CNS0095595Whole white alabastrum(diploid) 213.289
CNS0095596Whole white alabastrum(diploid) 315.311
CNS0095597Whole white alabastrum(diploid) 47.916
CNS0095598Silvery flower (diploied) 18.675
CNS0095599Silvery flower (diploied) 27.900
CNS0095600Silvery flower (diploied) 39.975
CNS0095601Golden flower (diploid) 15.883
CNS0095602Golden flower (diploid) 211.936
CNS0095603Golden flower (diploid) 39.726
CNS0095604Slightly white alabastrum(tetraploid) 120.866
CNS0095605Slightly white alabastrum(tetraploid) 216.838
CNS0095606Slightly white alabastrum(tetraploid) 325.368
CNS0095607Whole white alabastrum(tetraploid) 18.923
CNS0095608Whole white alabastrum(tetraploid) 213.948
CNS0095609Whole white alabastrum(tetraploid) 326.049
CNS0095610Silvery flower (tetraploid) 112.103
CNS0095611Silvery flower (tetraploid) 27.988
CNS0095612Silvery flower (tetraploid) 314.603
CNS0095613Golden flower (tetraploid) 110.557
CNS0095614Golden flower (tetraploid) 213.670
CNS0095615Golden flower (tetraploid) 39.336
CRA001975CRR073297Stem 117.925
CRR073298Stem 212.866
CRR073299Stem 314.703
CRR073300Leaf 120.403
CRR073301Leaf 219.541
CRR073302Leaf 321.297
CRR073303Juvenile bud 120.456
CRR073304Juvenile bud 219.564
CRR073305Juvenile bud 312.148
CRR073306Third green 116.000
CRR073307Third green 212.922
CRR073308Third green 315.161
CRR073309Second white 115.612
CRR073310Second white 218.750
CRR073311Second white 318.759
CRR073312Silver flowering 116.184
CRR073313Silver flowering 29.108
CRR073314Silver flowering 311.918
CRR073315Gold flowering 112.809
CRR073316Gold flowering 212.590
CRR073317Gold flowering 33.454
CRR073318Tawny withering 17.510
CRR073319Tawny withering 25.439
CRR073320Tawny withering 35.877