Detail information of GWHGAAZE028099


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIR10AT5G42350.10.004Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene4001491340017395+
GWHAAZE00000008mRNA4001491340017395+
GWHAAZE00000008exon4001491340015108+
GWHAAZE00000008exon4001523740015388+
GWHAAZE00000008exon4001721040017395+
GWHAAZE00000008CDS4001491340015108+
GWHAAZE00000008CDS4001523740015388+
GWHAAZE00000008CDS4001721040017395+
Transcript Sequence

Network for GWHGAAZE028099

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box1331610.00055
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.124
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.488
SRR8316897Juvenile bud stage 0.150
SRR8316894Third green stage 0.480
SRR8316900Third green stage 0.556
SRR8316901Third green stage 1.005
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.253
SRR6706287Light intensity 50%0.126
SRR6706288Light intensity 20%0.139
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.342
CNS0095593Slightly white alabastrum(diploid) 20.759
CNS0095594Slightly white alabastrum(diploid) 31.446
CNS0095595Whole white alabastrum(diploid) 21.668
CNS0095596Whole white alabastrum(diploid) 32.182
CNS0095597Whole white alabastrum(diploid) 43.559
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.150
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 11.650
CNS0095605Slightly white alabastrum(tetraploid) 21.066
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 13.616
CNS0095608Whole white alabastrum(tetraploid) 22.442
CNS0095609Whole white alabastrum(tetraploid) 30.903
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.066
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.000
CRR073298Stem 20.198
CRR073299Stem 30.139
CRR073300Leaf 10.288
CRR073301Leaf 20.240
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.067
CRR073304Juvenile bud 20.205
CRR073305Juvenile bud 30.000
CRR073306Third green 10.019
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.052
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.030
CRR073320Tawny withering 30.000