Detail information of GWHGAAZE028148


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP11762.17.825E-161unnamed protein product [Coffea canephora]
COGNP_441851.10.0000000033-beta hydroxysteroid dehydrogenase/isomerase
Swissprottr|P52581|IFRH_LUPAL1E-155Isoflavone reductase homolog
trEMBLtr|A0A068UTZ8|A0A068UTZ8_COFCA3E-161Coffea canephora DH200=94 genomic scaffold, scaffold_59 {ECO:0000313|EMBL:CDP11762.1}
TAIR10AT1G32100.18E-113pinoresinol reductase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene4247196542477164-
GWHAAZE00000008mRNA4247196542477164-
GWHAAZE00000008exon4247196542472128-
GWHAAZE00000008exon4247270242472854-
GWHAAZE00000008exon4247337642473616-
GWHAAZE00000008exon4247682942477164-
GWHAAZE00000008CDS4247682942477164-
GWHAAZE00000008CDS4247337642473616-
GWHAAZE00000008CDS4247270242472854-
GWHAAZE00000008CDS4247196542472128-
Transcript Sequence

Network for GWHGAAZE028148

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05368.14NmrA82251.00E-53
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K21568PLR Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of various secondary metabolites - part 2map00998

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.278
SRR3591706second leaf6.513
SRR3591707mature leaf1.188
SRR3591708Shoot apex7.146
SRR3591709Stem126.947
SRR3591710White floral bud13.540
SRR3591711White flower3.271
SRR3591712Green floral bud4.918
SRR3591713Yellow flower1.987
SRP173429 SRR8316895Juvenile bud stage 22.280
SRR8316896Juvenile bud stage 18.253
SRR8316897Juvenile bud stage 3.999
SRR8316894Third green stage 2.000
SRR8316900Third green stage 4.077
SRR8316901Third green stage 5.994
SRR8316898Complete white stage 1.225
SRR8316899Complete white stage 3.030
SRR8316903Complete white stage 2.966
SRR8316902Silver flowering stage1.635
SRR8316904Silver flowering stage1.528
SRR8316905Silver flowering stage0.426
SRR8316906Gold flowering stage 3.799
SRR8316907Gold flowering stage 4.549
SRR8316908Gold flowering stage 2.485
SRP132670SRR6706286Control3.111
SRR6706287Light intensity 50%3.796
SRR6706288Light intensity 20%3.332
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.569
CNS0095593Slightly white alabastrum(diploid) 25.684
CNS0095594Slightly white alabastrum(diploid) 314.175
CNS0095595Whole white alabastrum(diploid) 22.624
CNS0095596Whole white alabastrum(diploid) 33.611
CNS0095597Whole white alabastrum(diploid) 44.319
CNS0095598Silvery flower (diploied) 14.776
CNS0095599Silvery flower (diploied) 24.346
CNS0095600Silvery flower (diploied) 34.300
CNS0095601Golden flower (diploid) 11.962
CNS0095602Golden flower (diploid) 23.290
CNS0095603Golden flower (diploid) 33.187
CNS0095604Slightly white alabastrum(tetraploid) 11.445
CNS0095605Slightly white alabastrum(tetraploid) 22.102
CNS0095606Slightly white alabastrum(tetraploid) 35.961
CNS0095607Whole white alabastrum(tetraploid) 10.800
CNS0095608Whole white alabastrum(tetraploid) 20.807
CNS0095609Whole white alabastrum(tetraploid) 32.375
CNS0095610Silvery flower (tetraploid) 11.373
CNS0095611Silvery flower (tetraploid) 20.851
CNS0095612Silvery flower (tetraploid) 30.747
CNS0095613Golden flower (tetraploid) 10.524
CNS0095614Golden flower (tetraploid) 20.725
CNS0095615Golden flower (tetraploid) 30.168
CRA001975CRR073297Stem 129.652
CRR073298Stem 218.380
CRR073299Stem 35.696
CRR073300Leaf 12.097
CRR073301Leaf 22.689
CRR073302Leaf 31.847
CRR073303Juvenile bud 10.853
CRR073304Juvenile bud 20.517
CRR073305Juvenile bud 31.039
CRR073306Third green 11.095
CRR073307Third green 20.300
CRR073308Third green 30.615
CRR073309Second white 11.400
CRR073310Second white 21.454
CRR073311Second white 30.568
CRR073312Silver flowering 10.218
CRR073313Silver flowering 20.692
CRR073314Silver flowering 30.643
CRR073315Gold flowering 11.062
CRR073316Gold flowering 20.393
CRR073317Gold flowering 30.860
CRR073318Tawny withering 110.885
CRR073319Tawny withering 211.115
CRR073320Tawny withering 37.692