Gene detail

Detail information of GWHGAAZE028167

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002262775.1	3.22477E-96	PREDICTED: probable WRKY transcription factor 17 [Vitis vinifera]
Swissprot	tr\|Q9SV15\|WRK11_ARATH	3E-80	Probable WRKY transcription factor 11
trEMBL	tr\|F6H9I7\|F6H9I7_VITVI	1E-96	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48880.1}
TAIR10	AT4G31550.2	5E-57	WRKY DNA-binding protein 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	43668742	43670204	-
GWHAAZE00000008	mRNA	43668742	43670204	-
GWHAAZE00000008	exon	43669837	43670204	-
GWHAAZE00000008	exon	43669315	43669440	-
GWHAAZE00000008	exon	43668742	43669219	-
GWHAAZE00000008	CDS	43669837	43670204	-
GWHAAZE00000008	CDS	43669315	43669440	-
GWHAAZE00000008	CDS	43669039	43669219	-
GWHAAZE00000008	three_prime_UTR	43668742	43669038	-

Transcript Sequence
>GWHTAAZE028201 GGGCCGATAGTTGCGCCGGCCCCCGCACCTCTGCCGCCGCAGCAGCAGAGCTTGACACTTGACTTCACCAAACCTACAGCTACTACTAGTGAAACTACTAATGTTAATGCGCTAACTACCAAATCCAGTAAGCAGACTTTCAGCATATCGCCGCCGGTCTCGTCGGCGAACTCTTCCTTCATGTCATCTATCACCGGCGAAGGCAGCGTTTCTAACGGCAAGCAAGGATCGTCTCTATTTGTGGCTCCGACCGTTTCTGCAGGAAAACCGCCTTTGTCCGGCAAGAGGTGCCGCGAGCATGATCATTCCGGCAACTCTTCTGGCTCCGGTTCCGGCTCCCGCTCTGGCAGTTGCCACTGCAAGAAGAGGAAATCTCGAGTTCAGAAAACAATTCGAATCCCGGCGATCAGTTCGAAAATCGCCGATATTCCGGCGGACGACTACTCGTGGAGGAAATACGGCCAAAAGCCGATCAAGGGTTCACCATACCCACGGGGGTACTACAAGTGTAGCAGCTTGAGAGGGTGTCCGGCGAGGAAACACGTGGAGAGGGCGACGGACGATCCAACGATGCTGATCGTTACGTACGAAGGGGAGCATAAGCACACCGTAGACGCGATGCAGGAGAACGTAGCCCCTGCGTTGGGTTTGATGTTTCAGTCAACGCAAGGATAAGAATATTAATTGATTAAAAGGCTGAAAAGGATTGATAGAGGAGAGAGAAAAGTCAACGATAACGAGTTGACTGGATTTGTTAGCTAGAGGGGGTTAGATGTAAATTAACGAAAAATAGAAGGGTAGATTCTGTAATATCTTTGTTTAATTTAATTTAATTAACGGTGGATTTTGAGTTTGATTTTATTCTTTTTTTAAAGACTATGTAAGTTGGTGTATACAGTTTATCCAAAAGCCTGTCTCTAATCGTTAAGAAATATCTAAATTAACAAATAATTTTAATAATATTTAAAGTAA

Network for GWHGAAZE028167

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0141

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10533.10	Plant_zn_clust	95	142	1.50E-15
PF03106.16	WRKY	146	202	2.70E-26

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.616
	SRR3591706	second leaf	6.876
	SRR3591707	mature leaf	6.912
	SRR3591708	Shoot apex	16.353
	SRR3591709	Stem	51.240
	SRR3591710	White floral bud	21.748
	SRR3591711	White flower	40.255
	SRR3591712	Green floral bud	8.962
	SRR3591713	Yellow flower	21.773
SRP173429	SRR8316895	Juvenile bud stage	32.434
	SRR8316896	Juvenile bud stage	16.043
	SRR8316897	Juvenile bud stage	20.998
	SRR8316894	Third green stage	9.909
	SRR8316900	Third green stage	8.027
	SRR8316901	Third green stage	12.377
	SRR8316898	Complete white stage	0.963
	SRR8316899	Complete white stage	32.746
	SRR8316903	Complete white stage	2.681
	SRR8316902	Silver flowering stage	6.994
	SRR8316904	Silver flowering stage	6.296
	SRR8316905	Silver flowering stage	3.302
	SRR8316906	Gold flowering stage	19.707
	SRR8316907	Gold flowering stage	15.404
	SRR8316908	Gold flowering stage	25.118
SRP132670	SRR6706286	Control	5.398
	SRR6706287	Light intensity 50%	7.638
	SRR6706288	Light intensity 20%	5.662
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.814
	CNS0095593	Slightly white alabastrum(diploid) 2	45.924
	CNS0095594	Slightly white alabastrum(diploid) 3	35.362
	CNS0095595	Whole white alabastrum(diploid) 2	21.786
	CNS0095596	Whole white alabastrum(diploid) 3	3.223
	CNS0095597	Whole white alabastrum(diploid) 4	15.823
	CNS0095598	Silvery flower (diploied) 1	97.042
	CNS0095599	Silvery flower (diploied) 2	61.655
	CNS0095600	Silvery flower (diploied) 3	27.884
	CNS0095601	Golden flower (diploid) 1	73.740
	CNS0095602	Golden flower (diploid) 2	42.969
	CNS0095603	Golden flower (diploid) 3	42.499
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.501
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.745
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.511
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.445
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.320
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.757
	CNS0095610	Silvery flower (tetraploid) 1	4.881
	CNS0095611	Silvery flower (tetraploid) 2	4.026
	CNS0095612	Silvery flower (tetraploid) 3	11.069
	CNS0095613	Golden flower (tetraploid) 1	13.286
	CNS0095614	Golden flower (tetraploid) 2	5.664
	CNS0095615	Golden flower (tetraploid) 3	6.186
CRA001975	CRR073297	Stem 1	13.663
	CRR073298	Stem 2	8.761
	CRR073299	Stem 3	10.842
	CRR073300	Leaf 1	8.869
	CRR073301	Leaf 2	15.201
	CRR073302	Leaf 3	6.020
	CRR073303	Juvenile bud 1	8.813
	CRR073304	Juvenile bud 2	10.411
	CRR073305	Juvenile bud 3	20.116
	CRR073306	Third green 1	9.307
	CRR073307	Third green 2	8.356
	CRR073308	Third green 3	10.944
	CRR073309	Second white 1	18.091
	CRR073310	Second white 2	23.228
	CRR073311	Second white 3	26.689
	CRR073312	Silver flowering 1	72.932
	CRR073313	Silver flowering 2	60.587
	CRR073314	Silver flowering 3	39.559
	CRR073315	Gold flowering 1	20.521
	CRR073316	Gold flowering 2	28.782
	CRR073317	Gold flowering 3	31.298
	CRR073318	Tawny withering 1	27.378
	CRR073319	Tawny withering 2	87.994
	CRR073320	Tawny withering 3	35.718