Gene detail

Detail information of GWHGAAZE028190

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011094888.1	0	PREDICTED: laccase-17-like [Sesamum indicum]
COG	YP_007590081.1	2E-20	putative multicopper oxidase
Swissprot	tr\|Q9FJD5\|LAC17_ARATH	0	Laccase-17 (Precursor)
trEMBL	tr\|A0A022QG95\|A0A022QG95_ERYGU	0	Laccase {ECO:0000256\|RuleBase:RU361119}
TAIR10	AT5G60020.1	0	laccase 17

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	45318773	45320774	+
GWHAAZE00000008	mRNA	45318773	45320774	+
GWHAAZE00000008	exon	45318773	45318889	+
GWHAAZE00000008	exon	45319068	45319156	+
GWHAAZE00000008	exon	45319241	45319485	+
GWHAAZE00000008	exon	45319577	45319705	+
GWHAAZE00000008	exon	45319801	45320774	+
GWHAAZE00000008	CDS	45318773	45318889	+
GWHAAZE00000008	CDS	45319068	45319156	+
GWHAAZE00000008	CDS	45319241	45319485	+
GWHAAZE00000008	CDS	45319577	45319705	+
GWHAAZE00000008	CDS	45319801	45320774	+

Transcript Sequence
>GWHTAAZE028224 ATGGGTGCTTCTGTTCCTCCATCAATGGCTTTAATAGGAGCTCTCTTCTCATTGTTAACATTTTGTTTGATTCCTCAGCCTGCACTTGCTGGGATCACCAGGAACTACGAGTTTAATTTTCCGGGTCCTCGCATTGTAGCCCGCGAGGGTGACCGTCTACAAATAAAAGTCACTAACCATGTCTCAAACAACATTTCCATCCACTGGCATGGAATTAGACAGCTTAGAAGTGGGTGGGCTGATGGTCCAGCATATGTAACGCAGTGCCCTATTCAAACTGGACAGAGTTATGTGTATAACTACACCATTGTTGGCCAAAGAGGAACTCTCTTTTGGCACGCTCATATTTCATGGCTAAGATCTACTCTCTATGGTCCTCTAATCATCCTCCCCAAGATTAATGTGCCTTATCCATTTATCAAACCTCACAAGGAAGTTCCCATCATCTTTGGAGAGTGGTTCAATGCTGACACTGAGGCTATAATCAACCAAGCCTTACAAACTGGTGGAGGTCCAAATGTCTCTGATGCCTATACCATCAATGGACTTCCTGGGCCTTTATACAACTGCTCCGCAAAAGATTCGTTCAAGTTAAAGGTTAAGCCTGGAAAGACTTACCTTCTTCGATTCATTAATGCTGCCCTCAACGACGAGCTCTTCTTCAGTATTGCAAACCACAGCGTCACAGTAGTAGAAGCAGACGCCATTTACGTAAAACCATTTGAAACCGACACCATACTAATCACACCTGGACAAACAACTAATGTTCTTCTCAAAACCAAACCCGAATTCCCAGACGCCACTTTCCTCATGATGGCTAGACCATACGCAACCGGCCAAGGCACATTTGACAACTCAACTGTGGCCGCTATTCTTGAATACAAATCCCCAATTTCTCATTCTACAGTCTCAATTAAAAAACTCCCACTCTTAAAACCAACATTACCTCCTCTAAACGACACTTCTTTTGCTACAAAATTTAGCAAAAAATTGCGCAGCTTAGCTAGTGCTCAATTCCCTGCTAATGTACCACAAAAAGTTGACAAGAAATTTTTGTTTACAGTAGGGCTTGGCACAAGCCCTTGTGAGAAGAACAATACCTGCCAAGGACCCAACGGTACAAGATTTTCAGCTTCTATCAATAACATATCGTTTGTACAATCCACCGCTGCACTTCTCCAGTCCCACTTCTTTGGGCAATCAAATCAAGTTTATAGCTCTGATTTTCCTATTAGTCCCTTAAATTGGTTTAATTATACTGGGACCCCTCCAAATAATACTTTTGTGAGCAATGGTACAAAACTTGTGGTTCTGCCTTATAATACAAGTGTGGAGCTAGTGATGCAGGACACTAGCATTCTTGGTGCTGAGAGTCACCCCCTTCATCTCCACGGCTTCAATTTCTTTGTCGTTGGTCAAGGATTTGGAAACTATGATGCTAATAAGGATCCTAAAAAATTCAATCTTGTTGACCCGATTGAAAGGAACACAGTTGGTGTGCCCTCCGGTGGGTGGGTTGCTATTCGATTTCTAGCAGATAATCCAGGTTGGTAA

Network for GWHGAAZE028190

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0249

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07732.16	Cu-oxidase_3	39	132	5.40E-35
PF00394.23	Cu-oxidase	145	295	2.80E-42
PF07731.15	Cu-oxidase_2	420	516	1.40E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0046274	biological_process	lignin catabolic process
GO:0048046	cellular_component	apoplast
GO:0005507	molecular_function	copper ion binding
GO:0016491	molecular_function	oxidoreductase activity
GO:0052716	molecular_function	hydroquinone:oxygen oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.879
	SRR3591706	second leaf	1.343
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.596
	SRR3591709	Stem	2.466
	SRR3591710	White floral bud	1.357
	SRR3591711	White flower	0.303
	SRR3591712	Green floral bud	4.980
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.153
	SRR8316896	Juvenile bud stage	1.908
	SRR8316897	Juvenile bud stage	0.231
	SRR8316894	Third green stage	0.852
	SRR8316900	Third green stage	5.786
	SRR8316901	Third green stage	6.537
	SRR8316898	Complete white stage	0.172
	SRR8316899	Complete white stage	0.989
	SRR8316903	Complete white stage	0.463
	SRR8316902	Silver flowering stage	0.157
	SRR8316904	Silver flowering stage	0.064
	SRR8316905	Silver flowering stage	0.019
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.016
SRP132670	SRR6706286	Control	4.055
	SRR6706287	Light intensity 50%	3.138
	SRR6706288	Light intensity 20%	3.843
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.883
	CNS0095593	Slightly white alabastrum(diploid) 2	0.930
	CNS0095594	Slightly white alabastrum(diploid) 3	0.883
	CNS0095595	Whole white alabastrum(diploid) 2	0.664
	CNS0095596	Whole white alabastrum(diploid) 3	1.266
	CNS0095597	Whole white alabastrum(diploid) 4	0.434
	CNS0095598	Silvery flower (diploied) 1	0.050
	CNS0095599	Silvery flower (diploied) 2	0.017
	CNS0095600	Silvery flower (diploied) 3	0.091
	CNS0095601	Golden flower (diploid) 1	0.005
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.103
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.069
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.378
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.040
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.023
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.236
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.025
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.041
CRA001975	CRR073297	Stem 1	2.767
	CRR073298	Stem 2	2.141
	CRR073299	Stem 3	1.322
	CRR073300	Leaf 1	4.695
	CRR073301	Leaf 2	2.776
	CRR073302	Leaf 3	4.811
	CRR073303	Juvenile bud 1	0.330
	CRR073304	Juvenile bud 2	0.406
	CRR073305	Juvenile bud 3	1.235
	CRR073306	Third green 1	0.172
	CRR073307	Third green 2	0.387
	CRR073308	Third green 3	0.197
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.061
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.036
	CRR073318	Tawny withering 1	0.120
	CRR073319	Tawny withering 2	0.031
	CRR073320	Tawny withering 3	0.268