Gene detail

Detail information of GWHGAAZE028193

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011094888.1	0	PREDICTED: laccase-17-like [Sesamum indicum]
COG	YP_003855643.1	6E-23	copper-binding protein
Swissprot	tr\|Q9FJD5\|LAC17_ARATH	0	Laccase-17 (Precursor)
trEMBL	tr\|A0A022QG95\|A0A022QG95_ERYGU	0	Laccase {ECO:0000256\|RuleBase:RU361119}
TAIR10	AT5G60020.1	0	laccase 17

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	45341790	45344401	-
GWHAAZE00000008	mRNA	45341790	45344401	-
GWHAAZE00000008	exon	45344285	45344401	-
GWHAAZE00000008	exon	45344017	45344168	-
GWHAAZE00000008	exon	45343688	45343932	-
GWHAAZE00000008	exon	45343468	45343596	-
GWHAAZE00000008	exon	45342407	45343372	-
GWHAAZE00000008	exon	45341790	45342005	-
GWHAAZE00000008	CDS	45344285	45344401	-
GWHAAZE00000008	CDS	45344017	45344168	-
GWHAAZE00000008	CDS	45343688	45343932	-
GWHAAZE00000008	CDS	45343468	45343596	-
GWHAAZE00000008	CDS	45342407	45343372	-
GWHAAZE00000008	CDS	45341875	45342005	-
GWHAAZE00000008	three_prime_UTR	45341790	45341874	-

Transcript Sequence
>GWHTAAZE028227 ATGGGTGCTTCTGTTCCTCCATCAATGGCTTTAATAGGAGCTCTCTTCTCATTGTTAACATTTTGTTTGATTCCTCAGCCTGCACTTGCTGGGATCACCAGGAACTACGAGTTTAATATCAAATTGCAAAATGTGACGCGGCTATGTCATACGAAGAGCATGGTTACCGTCAATGGGCAGTTTCCGGGTCCTCGCATTGTAGCCCGCGAGGGTGACCGTCTACAAATAAAAGTCACTAACCATGTCTCAAACAACATTTCCATCCACTGGCATGGAATTAGACAGCTTAGAAGTGGGTGGGCTGATGGTCCAGCATATGTAACGCAGTGCCCTATTCAAACTGGACAGAGTTATGTGTATAACTACACCATTGTTGGCCAAAGAGGAACTCTCTTTTGGCACGCTCATATTTCATGGCTAAGATCTACTCTCTATGGTCCTCTAATCATCCTCCCCAAGATTAATGTGCCTTATCCATTTATCAAACCTCACAAGGAAGTTCCCATCATCTTTGGAGAGTGGTTCAATGCTGACACTGAGGCTATAATCAACCAAGCCTTACAAACTGGTGGAGGTCCAAATGTCTCTGATGCCTATACCATCAATGGACTTCCTGGGCCTTTCTACAACTGCTCCGCAAAAGATTCGTTCAAGTTAAAGGTTAAGCCTGGAAAGACTTACCTTCTTCGATTCATTAATGCTGCCCTCAACGACGAGCTCTTCTTCAGTATTGCAAACCACAGCGTCACAGTAGTAGAAGCAGACGCCATTTATGTAAAACCATTTGAAACCGACACCATACTAATCACACCTGGACAAACAACTAATGTTCTTCTCAAAACCAAACCCGAATTCCCAGACGCCACTTTCCTCATGATGGCTAGACCATACGCGACCGGCCAAGGCACATTTGACAACTCAACTGTGGCCGCTATTCTTGAATACAAATCCCCAATTTCTCATTCTACAGTCTCAATTAAAAAACTCCCACTCTTAAAACCAACATTACCTCCTCTAAACGACACTTCTTTTGCTACAAAATTTAGCAAAAAATTGCGCAGCTTAGCTAGTGCTCAATTCCCTGCTAATGTACCACAAAAAGTTGACAAGAAATTTTTGTTTACAGTAGGGCTTGGCACAAGCCCTTGTGAGAAGAACAATACCTGCCAAGGACCCAACGGTACAAGATTTTCAGCTTCTATCAATAACATATCGTTTGTACAATCCACCGCTGCACTTCTCCAGTCCCACTTCTTTGGGCAATCAAATCAAGTTTATAGCTCTGATTTTCCTATTAGTCCCTTAAATTGGTTTAATTATACTGGGACCCCTCCAAATAATACTTTTGTGAGCAATGGTACAAAACTTGTGGTTCTGCCTTATAATACAAGTGTGGAGCTAGTGATGCAGGACACTAGCATTCTTGGTGCTGAGAGTCACCCCCTTCATCTCCACGGCTTCAATTTCTTTGTCGTTGGTCAAGGATTTGGAAACTATGATGCTAATAAGGATCCTAAAAAATTCAATCTTGTTGACCCGATTGAAAGGAACACAGTTGGTGTGCCCTCCGGTGGGTGGGTTGCTATTCGATTTCTAGCAGATAATCCAGGGGTATGGTTCATGCATTGCCATCTGGAAGTACACACAAGCTGGGGTTTGAAAATGGCATGGCTTGTCTTAGATGGAAAGCTTCCCAATCAAAAGCTCCTTCCTCCACCCTCCGATCTCCCCAAATGTTGATCCATCTTATTCTTTTACAAGACCTCTTTTTTCCCTTTTTGAGTTATTGGCCTTGTGTGAATTTACGATTATTATGAGTTAATTG

Network for GWHGAAZE028193

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0249

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07732.16	Cu-oxidase_3	41	153	5.70E-41
PF00394.23	Cu-oxidase	166	316	7.40E-42
PF07731.15	Cu-oxidase_2	441	561	2.80E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046274	biological_process	lignin catabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0048046	cellular_component	apoplast
GO:0005507	molecular_function	copper ion binding
GO:0052716	molecular_function	hydroquinone:oxygen oxidoreductase activity
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.805
	SRR3591706	second leaf	0.935
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.578
	SRR3591709	Stem	0.870
	SRR3591710	White floral bud	1.079
	SRR3591711	White flower	0.218
	SRR3591712	Green floral bud	4.100
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.567
	SRR8316896	Juvenile bud stage	1.963
	SRR8316897	Juvenile bud stage	0.193
	SRR8316894	Third green stage	0.840
	SRR8316900	Third green stage	6.320
	SRR8316901	Third green stage	7.408
	SRR8316898	Complete white stage	0.114
	SRR8316899	Complete white stage	1.105
	SRR8316903	Complete white stage	0.262
	SRR8316902	Silver flowering stage	0.010
	SRR8316904	Silver flowering stage	0.332
	SRR8316905	Silver flowering stage	0.021
	SRR8316906	Gold flowering stage	0.011
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	6.888
	SRR6706287	Light intensity 50%	5.406
	SRR6706288	Light intensity 20%	5.674
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.815
	CNS0095593	Slightly white alabastrum(diploid) 2	1.391
	CNS0095594	Slightly white alabastrum(diploid) 3	0.669
	CNS0095595	Whole white alabastrum(diploid) 2	0.903
	CNS0095596	Whole white alabastrum(diploid) 3	1.527
	CNS0095597	Whole white alabastrum(diploid) 4	0.545
	CNS0095598	Silvery flower (diploied) 1	0.049
	CNS0095599	Silvery flower (diploied) 2	0.061
	CNS0095600	Silvery flower (diploied) 3	0.069
	CNS0095601	Golden flower (diploid) 1	0.018
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.111
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.105
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.112
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.045
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.009
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.391
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.048
	CNS0095612	Silvery flower (tetraploid) 3	0.071
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.290
	CRR073298	Stem 2	1.888
	CRR073299	Stem 3	2.876
	CRR073300	Leaf 1	5.641
	CRR073301	Leaf 2	2.971
	CRR073302	Leaf 3	6.697
	CRR073303	Juvenile bud 1	0.253
	CRR073304	Juvenile bud 2	0.358
	CRR073305	Juvenile bud 3	1.307
	CRR073306	Third green 1	0.230
	CRR073307	Third green 2	0.693
	CRR073308	Third green 3	0.536
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.022
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.005
	CRR073318	Tawny withering 1	0.027
	CRR073319	Tawny withering 2	0.153
	CRR073320	Tawny withering 3	0.128