Gene detail

Detail information of GWHGAAZE028196

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280120.2	0	PREDICTED: endoglucanase 16-like [Vitis vinifera]
COG	YP_002464713.1	7E-78	glycoside hydrolase family protein
Swissprot	tr\|Q8VYG3\|GUN16_ARATH	0	Endoglucanase 16 (Precursor)
trEMBL	tr\|F6H2T0\|F6H2T0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46615.1}
TAIR10	AT3G43860.1	1E-164	glycosyl hydrolase 9A4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	45478768	45486751	+
GWHAAZE00000008	mRNA	45478768	45486751	+
GWHAAZE00000008	exon	45478768	45478980	+
GWHAAZE00000008	exon	45479637	45479846	+
GWHAAZE00000008	exon	45480463	45480663	+
GWHAAZE00000008	exon	45481655	45481859	+
GWHAAZE00000008	exon	45484996	45485159	+
GWHAAZE00000008	exon	45486419	45486751	+
GWHAAZE00000008	CDS	45478768	45478980	+
GWHAAZE00000008	CDS	45479637	45479846	+
GWHAAZE00000008	CDS	45480463	45480663	+
GWHAAZE00000008	CDS	45481655	45481859	+
GWHAAZE00000008	CDS	45484996	45485159	+
GWHAAZE00000008	CDS	45486419	45486751	+

Transcript Sequence
>GWHTAAZE028230 ATGGGGATGAATGCAAGAGCATTATGCAGTGTGGCATGGTTGGTGGTGTTGCAAGGGTTATTTTGGGTTGGTGTTAATGGAGATTTTAATTACAAAGAAGCCCTTACAAAATCTCTTATTTTCTTGGAGGCACAAAGATCTGGAAAGCTCCCTCCCAACCATACCCTCTCTTGGAGAGGAGATTCTGCTCTTGAAGATGGCAAACTTGCCAATGTGGACCTAGTTGGAGGATACTATGATGCAGGGGACAATGTGAAATATGGGCTGCCAATGGCATTCACAGTGACCACACTTTCATGGGCAGCCATCTTCTATAAATATGAGCTCAAAGATGCTGGAGAGTTAGATAATACCCTTGCTGCTATTCGTTGGGGCACTGATTATCTTCTGAAATGCTCTTCTAAAAACTCCTTGTTTGTCCAGGTAGGGGATCCAGTAAAGGACCATGAATGTTGGATAAGGCCAGAGAACATGAACACACCAAGAACAGTGCTAAAGATAGACACGAGAAATCCTGGTACTGAATTGGCTGCCGAAACTTCCGCAGCATTGGCAGCTGCGTCTATCACCTTCAGAAGCTCAGATCATACATATTCCCATAGTCTCCTCAACAAAGCCAAAATGCTTTTTGAATTTGCGAAAACAAACAAAGGAACATATGATGGAGAATGTCCCTTCTATTGCTCATACTCAGGGTACAATGATGAACTAATGTGGGCAGCAACATGGTTATACATGGCCACCAGAAAGCCTGTTTATCTAAATTATGTCAAAGAGGAAGCCATTAGTGCTACTGTTGCTGAGTTTAACTGGGATCTTAAATACGCTGGGGGTTTAGTTATGATGAGAGATGGGGCAAATGCGCAATACGTGACGGGCACTGCTTTCCTGTTTACAGTATACAGTGATGTGTTGGCGAGACACAACCAACGCCTCAACTGCGGAGACAAACAGTTTAGTCCTTCCCACCTTATGGCTTTTGCAAAGCAACAGATGGATTATCTACTAGGGAAGAACCCAAAAGGAAGATCATACATGGTAGGGTTTGGGAACAACCCACCGACACAAGCCCACCACAGGGGTGCCTCAGTCCCCCCGCTGCCACCGGGAACCCCAATCAACTGCGGGATGACCTTCGTCTACTACTACAACAAGGACGCGCCCAATCCTAACGAGCTCACTGGCGCCATCGTTGGCGGACCTGACAAAAACGATGACTTCAATGACAAGCGTACTCAATCGTCCATGACCGAGCCCACTACTTATACCAACTCCCTCGCTGTTGGTGTTCTCGCAAAACTAGCTAGACAACGTTCGGTCTCTTGA

Network for GWHGAAZE028196

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00759.20	Glyco_hydro_9	31	281	6.90E-89

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01179	E3.2.1.4	Metabolic pathways	map01100
		Starch and sucrose metabolism	map00500
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.155
	SRR3591706	second leaf	0.053
	SRR3591707	mature leaf	0.040
	SRR3591708	Shoot apex	0.382
	SRR3591709	Stem	0.908
	SRR3591710	White floral bud	83.315
	SRR3591711	White flower	2.732
	SRR3591712	Green floral bud	80.549
	SRR3591713	Yellow flower	0.140
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.068
	SRR8316897	Juvenile bud stage	0.140
	SRR8316894	Third green stage	0.153
	SRR8316900	Third green stage	11.349
	SRR8316901	Third green stage	7.431
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.182
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.167
	SRR8316904	Silver flowering stage	1.022
	SRR8316905	Silver flowering stage	0.099
	SRR8316906	Gold flowering stage	0.026
	SRR8316907	Gold flowering stage	0.133
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	13.191
	SRR6706287	Light intensity 50%	14.258
	SRR6706288	Light intensity 20%	12.646
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.997
	CNS0095593	Slightly white alabastrum(diploid) 2	4.127
	CNS0095594	Slightly white alabastrum(diploid) 3	3.331
	CNS0095595	Whole white alabastrum(diploid) 2	48.212
	CNS0095596	Whole white alabastrum(diploid) 3	50.806
	CNS0095597	Whole white alabastrum(diploid) 4	88.720
	CNS0095598	Silvery flower (diploied) 1	0.269
	CNS0095599	Silvery flower (diploied) 2	1.260
	CNS0095600	Silvery flower (diploied) 3	0.366
	CNS0095601	Golden flower (diploid) 1	0.357
	CNS0095602	Golden flower (diploid) 2	0.139
	CNS0095603	Golden flower (diploid) 3	0.334
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.896
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.976
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	86.462
	CNS0095608	Whole white alabastrum(tetraploid) 2	143.312
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.087
	CNS0095610	Silvery flower (tetraploid) 1	0.541
	CNS0095611	Silvery flower (tetraploid) 2	1.368
	CNS0095612	Silvery flower (tetraploid) 3	4.611
	CNS0095613	Golden flower (tetraploid) 1	0.287
	CNS0095614	Golden flower (tetraploid) 2	0.112
	CNS0095615	Golden flower (tetraploid) 3	1.635
CRA001975	CRR073297	Stem 1	0.628
	CRR073298	Stem 2	0.377
	CRR073299	Stem 3	0.235
	CRR073300	Leaf 1	22.513
	CRR073301	Leaf 2	8.451
	CRR073302	Leaf 3	4.138
	CRR073303	Juvenile bud 1	30.170
	CRR073304	Juvenile bud 2	22.451
	CRR073305	Juvenile bud 3	1.248
	CRR073306	Third green 1	6.346
	CRR073307	Third green 2	11.727
	CRR073308	Third green 3	7.831
	CRR073309	Second white 1	0.666
	CRR073310	Second white 2	1.328
	CRR073311	Second white 3	2.192
	CRR073312	Silver flowering 1	4.941
	CRR073313	Silver flowering 2	5.179
	CRR073314	Silver flowering 3	2.548
	CRR073315	Gold flowering 1	6.320
	CRR073316	Gold flowering 2	0.935
	CRR073317	Gold flowering 3	3.234
	CRR073318	Tawny withering 1	6.674
	CRR073319	Tawny withering 2	7.546
	CRR073320	Tawny withering 3	5.222