Gene detail

Detail information of GWHGAAZE028216

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008361043.1	7.1897E-139	PREDICTED: cation transport regulator-like protein 2 [Malus domestica]
COG	YP_003898319.1	2E-30	cation transporter ChaC
trEMBL	tr\|B9SPS7\|B9SPS7_RICCO	9E-136	Cation transport protein chaC, putative {ECO:0000313\|EMBL:EEF34408.1}
TAIR10	AT5G26220.1	6E-91	ChaC-like family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	46514421	46517337	-
GWHAAZE00000008	mRNA	46514421	46517337	-
GWHAAZE00000008	exon	46514421	46514599	-
GWHAAZE00000008	exon	46515176	46515255	-
GWHAAZE00000008	exon	46515358	46515429	-
GWHAAZE00000008	exon	46515688	46515728	-
GWHAAZE00000008	exon	46516245	46516301	-
GWHAAZE00000008	exon	46516562	46516618	-
GWHAAZE00000008	exon	46517024	46517100	-
GWHAAZE00000008	exon	46517229	46517337	-
GWHAAZE00000008	CDS	46517229	46517337	-
GWHAAZE00000008	CDS	46517024	46517100	-
GWHAAZE00000008	CDS	46516562	46516618	-
GWHAAZE00000008	CDS	46516245	46516301	-
GWHAAZE00000008	CDS	46515688	46515728	-
GWHAAZE00000008	CDS	46515358	46515429	-
GWHAAZE00000008	CDS	46515176	46515255	-
GWHAAZE00000008	CDS	46514421	46514599	-

Transcript Sequence
>GWHTAAZE028250 ATGGTCTTCTGGGTTTTTGGCTATGGCTCATTGGTCTGGAACCCTGGATTTAAGTATGATGAGAAAATGATAGGTTACATCAAGGACTATAGGCGTGTTTTCGATCTTGCGTGCATAGATCACCGAGGTACGCCTGAACACCCTGCAAGAACCTGTACGTTGGAATACAGCGAAGGAGCCATCTGCTGGGGTGCTGCCTATTGTATTCGAGGAGGCGTGGAAAAGGAAAAATTGGCAATGGAGTACTTGGAAAAGAGAGAATGCGAGTATGATCATAAGACGCTGGTGGACTTTTTCAAGGAAGGAGACTCTGACCAGCCTGCTATAACAGGAGTCATAGTTTTTACATCTACTCCAGACAAAGAAACAAATAAGTACTACCTAGGGCCCGCCCCATTGGAAGATATGGCAAGGCAAATTGCAACTGCTTTTGGTCCTTGCGGGAATAACAGAGACTATGTCTTTTTGCTGGAGAAGGCCATGTTTGATATTGGTCATGAAGATGACATGGTGATAGAGCTGGCAAATGAAGTGAGGAAAGTCCTTGGAATCGTTCGTGGAGGAATACCTATGGAGAAGAGGCTGATCGGCCCGTCTCACATCCCACTCAAATCCCACATCCCCCCTCTTATACTTCGCCCTCTCCCAGAAGCCTTGGCAATGGATTCGTGA

Network for GWHGAAZE028216

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04752.13	ChaC	4	180	1.60E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K22596	GGCT	Metabolic pathways	map01100
K22596	GGCT	Glutathione metabolism	map00480

Gene Ontology

GO term	Ontology	Name
GO:0006751	biological_process	glutathione catabolic process
GO:0003839	molecular_function	gamma-glutamylcyclotransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	109.272
	SRR3591706	second leaf	280.055
	SRR3591707	mature leaf	36.467
	SRR3591708	Shoot apex	111.090
	SRR3591709	Stem	91.502
	SRR3591710	White floral bud	64.839
	SRR3591711	White flower	74.406
	SRR3591712	Green floral bud	56.276
	SRR3591713	Yellow flower	44.305
SRP173429	SRR8316895	Juvenile bud stage	36.621
	SRR8316896	Juvenile bud stage	35.195
	SRR8316897	Juvenile bud stage	62.911
	SRR8316894	Third green stage	6.517
	SRR8316900	Third green stage	14.021
	SRR8316901	Third green stage	20.337
	SRR8316898	Complete white stage	3.040
	SRR8316899	Complete white stage	24.281
	SRR8316903	Complete white stage	4.162
	SRR8316902	Silver flowering stage	10.033
	SRR8316904	Silver flowering stage	5.548
	SRR8316905	Silver flowering stage	2.371
	SRR8316906	Gold flowering stage	10.092
	SRR8316907	Gold flowering stage	10.703
	SRR8316908	Gold flowering stage	21.073
SRP132670	SRR6706286	Control	14.840
	SRR6706287	Light intensity 50%	14.480
	SRR6706288	Light intensity 20%	13.734
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.934
	CNS0095593	Slightly white alabastrum(diploid) 2	35.726
	CNS0095594	Slightly white alabastrum(diploid) 3	44.049
	CNS0095595	Whole white alabastrum(diploid) 2	42.054
	CNS0095596	Whole white alabastrum(diploid) 3	24.707
	CNS0095597	Whole white alabastrum(diploid) 4	36.111
	CNS0095598	Silvery flower (diploied) 1	53.400
	CNS0095599	Silvery flower (diploied) 2	64.797
	CNS0095600	Silvery flower (diploied) 3	28.430
	CNS0095601	Golden flower (diploid) 1	69.447
	CNS0095602	Golden flower (diploid) 2	46.541
	CNS0095603	Golden flower (diploid) 3	44.441
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.917
	CNS0095605	Slightly white alabastrum(tetraploid) 2	44.816
	CNS0095606	Slightly white alabastrum(tetraploid) 3	58.531
	CNS0095607	Whole white alabastrum(tetraploid) 1	59.592
	CNS0095608	Whole white alabastrum(tetraploid) 2	51.810
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.167
	CNS0095610	Silvery flower (tetraploid) 1	18.158
	CNS0095611	Silvery flower (tetraploid) 2	18.566
	CNS0095612	Silvery flower (tetraploid) 3	34.130
	CNS0095613	Golden flower (tetraploid) 1	19.062
	CNS0095614	Golden flower (tetraploid) 2	17.637
	CNS0095615	Golden flower (tetraploid) 3	19.254
CRA001975	CRR073297	Stem 1	28.764
	CRR073298	Stem 2	25.211
	CRR073299	Stem 3	28.530
	CRR073300	Leaf 1	22.812
	CRR073301	Leaf 2	25.236
	CRR073302	Leaf 3	19.492
	CRR073303	Juvenile bud 1	20.223
	CRR073304	Juvenile bud 2	12.855
	CRR073305	Juvenile bud 3	13.870
	CRR073306	Third green 1	11.115
	CRR073307	Third green 2	13.468
	CRR073308	Third green 3	15.823
	CRR073309	Second white 1	12.174
	CRR073310	Second white 2	12.543
	CRR073311	Second white 3	20.432
	CRR073312	Silver flowering 1	16.418
	CRR073313	Silver flowering 2	11.078
	CRR073314	Silver flowering 3	10.946
	CRR073315	Gold flowering 1	44.019
	CRR073316	Gold flowering 2	50.972
	CRR073317	Gold flowering 3	36.570
	CRR073318	Tawny withering 1	33.468
	CRR073319	Tawny withering 2	89.801
	CRR073320	Tawny withering 3	51.197