Gene detail

Detail information of GWHGAAZE028217

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002262775.1	3.22477E-96	PREDICTED: probable WRKY transcription factor 17 [Vitis vinifera]
Swissprot	tr\|Q9SV15\|WRK11_ARATH	3E-80	Probable WRKY transcription factor 11
trEMBL	tr\|F6H9I7\|F6H9I7_VITVI	1E-96	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48880.1}
TAIR10	AT4G31550.2	5E-57	WRKY DNA-binding protein 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	46734548	46736009	-
GWHAAZE00000008	mRNA	46734548	46736009	-
GWHAAZE00000008	exon	46735642	46736009	-
GWHAAZE00000008	exon	46735121	46735246	-
GWHAAZE00000008	exon	46734548	46735025	-
GWHAAZE00000008	CDS	46735642	46736009	-
GWHAAZE00000008	CDS	46735121	46735246	-
GWHAAZE00000008	CDS	46734845	46735025	-
GWHAAZE00000008	three_prime_UTR	46734548	46734844	-

Transcript Sequence
>GWHTAAZE028251 GGGCCGATAGTTGCGCCGGCCCCCGCACCTCTGCCGCCGCAGCAGCAGAGCTTGACACTTGACTTCACCAAACCTACAGCTACTACTAGTGAAACTACTAATGTTAATGCGCTAACTACCAAATCCAGTAAGCAGACTTTCAGCATATCGCCGCCGGTCTCGTCGGCGAACTCTTCCTTCATGTCATCTATCACCGGCGAAGGCAGCGTTTCTAACGGCAAGCAAGGATCGTCTCTATTTGTGGCTCCGACCGTTTCTGCAGGAAAACCGCCTTTGTCCGGCAAGAGGTGCCGCGAGCATGATCATTCCGGCAACTCTTCTGGCTCCGGTTCCGGCTCCCGCTCTGGCAGTTGCCACTGCAAGAAGAGGAAATCTCGAGTTCAGAAAACAATTCGAATCCCGGCGATCAGTTCGAAAATCGCCGATATTCCGGCGGACGACTACTCGTGGAGGAAATACGGCCAAAAGCCGATCAAGGGTTCACCATACCCACGGGGGTACTACAAGTGTAGCAGCTTGAGAGGGTGTCCGGCGAGGAAACACGTGGAGAGGGCGACGGACGATCCAACGATGCTGATCGTTACGTACGAAGGGGAGCATAAGCACACCGTAGACGCGATGCAGGAGAACGTAGCCCCTGCGTTGGGTTTGATGTTTCAGTCAACGCAAGGATAAGAATATTAATTGATTAAAAGGCTGAAAAGGATTGATAGAGGAGAGAGAAAAGTCAACGATAACGAGTTGACTGGGTTTGTTAGCTAGAGGGGGTTAGATGTAAATTAACGAAAAATAGAAGGGTAGATTCTGTAATATCTTTGTTTAATTTAATTTAATTAACGGTGGATTTTGAGTTTGATTTTATTCTTTTTTTAAAGACTATGTAAGTTGGTGTATACAGTTTATCCAAAAGCCTGTCTCTAATCGTTAAGAAATATCTAAATTAACAAATAATTTTAATAATATTTAAAGTAA

Network for GWHGAAZE028217

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0141

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10533.10	Plant_zn_clust	95	142	1.50E-15
PF03106.16	WRKY	146	202	2.70E-26

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.066
	SRR3591706	second leaf	9.341
	SRR3591707	mature leaf	9.549
	SRR3591708	Shoot apex	23.561
	SRR3591709	Stem	73.352
	SRR3591710	White floral bud	10.785
	SRR3591711	White flower	32.930
	SRR3591712	Green floral bud	7.626
	SRR3591713	Yellow flower	22.955
SRP173429	SRR8316895	Juvenile bud stage	33.454
	SRR8316896	Juvenile bud stage	16.889
	SRR8316897	Juvenile bud stage	22.916
	SRR8316894	Third green stage	10.065
	SRR8316900	Third green stage	9.308
	SRR8316901	Third green stage	14.183
	SRR8316898	Complete white stage	0.878
	SRR8316899	Complete white stage	29.719
	SRR8316903	Complete white stage	2.321
	SRR8316902	Silver flowering stage	5.783
	SRR8316904	Silver flowering stage	6.571
	SRR8316905	Silver flowering stage	2.628
	SRR8316906	Gold flowering stage	18.097
	SRR8316907	Gold flowering stage	15.188
	SRR8316908	Gold flowering stage	28.043
SRP132670	SRR6706286	Control	6.104
	SRR6706287	Light intensity 50%	7.319
	SRR6706288	Light intensity 20%	4.675
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.856
	CNS0095593	Slightly white alabastrum(diploid) 2	30.810
	CNS0095594	Slightly white alabastrum(diploid) 3	31.806
	CNS0095595	Whole white alabastrum(diploid) 2	12.881
	CNS0095596	Whole white alabastrum(diploid) 3	3.061
	CNS0095597	Whole white alabastrum(diploid) 4	16.278
	CNS0095598	Silvery flower (diploied) 1	64.122
	CNS0095599	Silvery flower (diploied) 2	58.902
	CNS0095600	Silvery flower (diploied) 3	26.503
	CNS0095601	Golden flower (diploid) 1	59.644
	CNS0095602	Golden flower (diploid) 2	39.928
	CNS0095603	Golden flower (diploid) 3	40.335
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.801
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.859
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.843
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.819
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.771
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.135
	CNS0095610	Silvery flower (tetraploid) 1	6.942
	CNS0095611	Silvery flower (tetraploid) 2	5.993
	CNS0095612	Silvery flower (tetraploid) 3	7.479
	CNS0095613	Golden flower (tetraploid) 1	11.016
	CNS0095614	Golden flower (tetraploid) 2	12.632
	CNS0095615	Golden flower (tetraploid) 3	6.993
CRA001975	CRR073297	Stem 1	9.289
	CRR073298	Stem 2	9.475
	CRR073299	Stem 3	10.194
	CRR073300	Leaf 1	8.904
	CRR073301	Leaf 2	16.160
	CRR073302	Leaf 3	7.719
	CRR073303	Juvenile bud 1	10.920
	CRR073304	Juvenile bud 2	10.364
	CRR073305	Juvenile bud 3	19.268
	CRR073306	Third green 1	7.001
	CRR073307	Third green 2	7.026
	CRR073308	Third green 3	8.934
	CRR073309	Second white 1	11.981
	CRR073310	Second white 2	19.258
	CRR073311	Second white 3	21.987
	CRR073312	Silver flowering 1	60.464
	CRR073313	Silver flowering 2	47.795
	CRR073314	Silver flowering 3	33.547
	CRR073315	Gold flowering 1	20.010
	CRR073316	Gold flowering 2	24.839
	CRR073317	Gold flowering 3	28.195
	CRR073318	Tawny withering 1	27.673
	CRR073319	Tawny withering 2	86.264
	CRR073320	Tawny withering 3	37.377