Gene detail

Detail information of GWHGAAZE028235

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP44151.1	1.277E-146	hypothetical protein JCGZ_05618 [Jatropha curcas]
COG	YP_007590081.1	6E-21	putative multicopper oxidase
Swissprot	tr\|Q9FJD5\|LAC17_ARATH	1E-136	Laccase-17 (Precursor)
trEMBL	tr\|A0A067L6R3\|A0A067L6R3_JATCU	5E-147	Laccase {ECO:0000256\|RuleBase:RU361119}
TAIR10	AT5G60020.1	3E-112	laccase 17

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	47949013	47950234	+
GWHAAZE00000008	mRNA	47949013	47950234	+
GWHAAZE00000008	exon	47949013	47949129	+
GWHAAZE00000008	exon	47949246	47949397	+
GWHAAZE00000008	exon	47949482	47949726	+
GWHAAZE00000008	exon	47949818	47949946	+
GWHAAZE00000008	exon	47950040	47950234	+
GWHAAZE00000008	CDS	47949013	47949129	+
GWHAAZE00000008	CDS	47949246	47949397	+
GWHAAZE00000008	CDS	47949482	47949726	+
GWHAAZE00000008	CDS	47949818	47949946	+
GWHAAZE00000008	CDS	47950040	47950149	+
GWHAAZE00000008	three_prime_UTR	47950150	47950234	+

Transcript Sequence
>GWHTAAZE028269 ATGGGTGCTTCTGTTCTTCCATCAATGGCTTTAATAGGAGCTCTCTTCTCATTGTTAACATTTTGTTTGATTCCTCAGCCTGCACTTGCTGGGGTCACCAGGAACTACGAGTTTAATATCAAATTGCAAAATGTGACGCGGCTATGTCATACGAAGAGCATGGTTACCGTCAATGGGCAGTTTCCGGGTCCTCGCATTGTAGCCCGCGAGGGTGACCGTCTACAAATAAAAGTCACTAACCATGTCTCAAACAACATTTCCATCCACTGGCATGGAATTAGACAGCTTAGAAGTGGGTGGGCTGATGGTCCAGCATATGTAACGCAGTGCCCTATTCAAACTGGACAGAGTTATGTGTATAACTACACCATTGTTGGCCAAAGAGGAACTCTCTTTTGGCACGCTCATATTTCATGGCTAAGATCTACTCTCTATGGTCCTCTAATCATCCTCCCCAAGATTAATGTGCCTTATCCATTTATCAAACCTCACAAGGAAGTTCCCATCATCTTTGGAGAGTGGTTCAATGCTGACACTGAGGCTATAATCAACCAAGCCTTACAAACTGGTGGAGGTCCAAATGTCTCTGATGCCTATACCATCAATGGACTTCCTGGGCCTTTATACAACTGCTCATATAAAGATTCGTTCAAGTTAAAGGTTAAGCCTGGAAAGACTTACCTTCTTCGATTCATTAATGCTGCCCTCAACGACGAGCTCTTCTTCAGATTGCAAACCACAGCGTCCGAGTAGAAGCAGACGCCATTTACGTAAAACCATTTGAAACCGACACCATACTAATCACACCTGGACAAACAACTAATGTTCTTCTCAAAAC

Network for GWHGAAZE028235

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0249

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07732.16	Cu-oxidase_3	41	153	9.10E-42
PF00394.23	Cu-oxidase	166	245	2.30E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005507	molecular_function	copper ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.518
	SRR3591706	second leaf	1.034
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.423
	SRR3591709	Stem	1.644
	SRR3591710	White floral bud	1.600
	SRR3591711	White flower	0.303
	SRR3591712	Green floral bud	5.029
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.047
	SRR8316896	Juvenile bud stage	0.936
	SRR8316897	Juvenile bud stage	0.078
	SRR8316894	Third green stage	0.540
	SRR8316900	Third green stage	3.705
	SRR8316901	Third green stage	4.520
	SRR8316898	Complete white stage	0.176
	SRR8316899	Complete white stage	0.841
	SRR8316903	Complete white stage	0.250
	SRR8316902	Silver flowering stage	0.273
	SRR8316904	Silver flowering stage	0.109
	SRR8316905	Silver flowering stage	0.016
	SRR8316906	Gold flowering stage	0.007
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	4.545
	SRR6706287	Light intensity 50%	3.557
	SRR6706288	Light intensity 20%	4.086
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.187
	CNS0095593	Slightly white alabastrum(diploid) 2	0.206
	CNS0095594	Slightly white alabastrum(diploid) 3	0.517
	CNS0095595	Whole white alabastrum(diploid) 2	0.407
	CNS0095596	Whole white alabastrum(diploid) 3	0.159
	CNS0095597	Whole white alabastrum(diploid) 4	0.099
	CNS0095598	Silvery flower (diploied) 1	0.036
	CNS0095599	Silvery flower (diploied) 2	0.129
	CNS0095600	Silvery flower (diploied) 3	0.037
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.125
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.145
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.195
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.057
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.773
	CNS0095610	Silvery flower (tetraploid) 1	0.064
	CNS0095611	Silvery flower (tetraploid) 2	0.093
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.300
	CRR073298	Stem 2	0.832
	CRR073299	Stem 3	0.493
	CRR073300	Leaf 1	1.596
	CRR073301	Leaf 2	1.476
	CRR073302	Leaf 3	6.649
	CRR073303	Juvenile bud 1	0.292
	CRR073304	Juvenile bud 2	0.132
	CRR073305	Juvenile bud 3	0.505
	CRR073306	Third green 1	0.117
	CRR073307	Third green 2	1.104
	CRR073308	Third green 3	0.136
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.010
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.051
	CRR073320	Tawny withering 3	0.020