Gene detail

Detail information of GWHGAAZE028236

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN80346.1	7.6426E-158	hypothetical protein VITISV_003134 [Vitis vinifera]
Swissprot	tr\|Q9FJD5\|LAC17_ARATH	2E-126	Laccase-17 (Precursor)
trEMBL	tr\|A5ARD9\|A5ARD9_VITVI	3E-158	Laccase {ECO:0000256\|RuleBase:RU361119}
TAIR10	AT5G60020.1	3E-89	laccase 17

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	47950266	47951618	+
GWHAAZE00000008	mRNA	47950266	47951618	+
GWHAAZE00000008	exon	47950266	47951005	+
GWHAAZE00000008	exon	47951405	47951618	+
GWHAAZE00000008	CDS	47950266	47951005	+
GWHAAZE00000008	CDS	47951405	47951618	+

Transcript Sequence
>GWHTAAZE028270 ATGATGGCTAGACCATACGCGACCGGCCAAGGCACATTTGACAACTCAACTGTGGCCGCTATTCTTGAATACAAATCCCCAATTTCTCATTCTACAGTCTCAATTAAAAAACTCCCACTCTTAAAACCAACATTACCTCCTCTAAACGACACTTCTTTTGCTACAAAATTTAGCAAAAAATTGCGCAGCTTAGCTAGTGCTCAATTCCCTGCTAATGTACCACAAAAAGTTGACAAGAAATTTTTGTTTACAGTAGGGCTTGGCACAAGCCCTTGTGAGAAGAACAATACCTGCCAAGGACCCAACGGTACAAGATTTTCAGCTTCTATCAATAACATATCGTTTGTACAATCCACAACTGCACTTCTCCAGTCCCACTTCTTTGGGCAATCAAATCAAGTTTATAGCTCTGATTTTCCTATTAGTCCCTTAAATTGGTTTAATTATACTGGGACCCCTCCAAATAATACTTTTGTGAGCAATGGTACAAAACTTGTGGTTCTGCCTTATAATACAAGTGTGGAGCTAGTGATGCAGGACACTAGCATTCTTGGTGCTGAGAGTCACCCCCTTCATCTCCACGGCTTCAATTTCTTTGTCGTTGGTCAAGGATTTGGAAACTATGATGCTAATAAGGATCCTAAAAAATTCAATCTTGTTGACCCGATTGAAAGGAACACAGTTGGTGTGCCCTCCGGTGGGTGGGTTGCTATTCGATTTCTAGCAGATAATCCAGGTTGGGGTATGGTTCATGCATTGCCATCTGGAAGTACACACAAGCTGGGGTTTGAAAATGGCATGGCTTGTCTTAGATGGAAAGCTTCCCAATCAAAAGCTCCTTCCTCCACCCTCCGATCTCCCCAAATGTTGATCCATCTTATTCTTTTACAAGACCTCTTTTTTTCCCTTTTTTTGAGTTATTGGCCTTGTGTGAATTTACGATTATTATTATGA

Network for GWHGAAZE028236

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0249

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07731.15	Cu-oxidase_2	149	251	7.50E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005507	molecular_function	copper ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.555
	SRR3591706	second leaf	1.887
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.817
	SRR3591709	Stem	1.196
	SRR3591710	White floral bud	2.177
	SRR3591711	White flower	0.396
	SRR3591712	Green floral bud	9.106
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.188
	SRR8316896	Juvenile bud stage	1.738
	SRR8316897	Juvenile bud stage	0.628
	SRR8316894	Third green stage	1.556
	SRR8316900	Third green stage	7.124
	SRR8316901	Third green stage	8.150
	SRR8316898	Complete white stage	0.255
	SRR8316899	Complete white stage	1.076
	SRR8316903	Complete white stage	0.411
	SRR8316902	Silver flowering stage	0.044
	SRR8316904	Silver flowering stage	0.211
	SRR8316905	Silver flowering stage	0.060
	SRR8316906	Gold flowering stage	0.019
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.053
SRP132670	SRR6706286	Control	2.961
	SRR6706287	Light intensity 50%	2.389
	SRR6706288	Light intensity 20%	2.738
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.069
	CNS0095593	Slightly white alabastrum(diploid) 2	2.917
	CNS0095594	Slightly white alabastrum(diploid) 3	1.647
	CNS0095595	Whole white alabastrum(diploid) 2	1.411
	CNS0095596	Whole white alabastrum(diploid) 3	2.810
	CNS0095597	Whole white alabastrum(diploid) 4	1.636
	CNS0095598	Silvery flower (diploied) 1	0.134
	CNS0095599	Silvery flower (diploied) 2	0.070
	CNS0095600	Silvery flower (diploied) 3	0.099
	CNS0095601	Golden flower (diploid) 1	0.034
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.480
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.671
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.368
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.143
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.081
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.077
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.529
	CRR073298	Stem 2	0.846
	CRR073299	Stem 3	1.249
	CRR073300	Leaf 1	3.232
	CRR073301	Leaf 2	1.823
	CRR073302	Leaf 3	3.582
	CRR073303	Juvenile bud 1	0.574
	CRR073304	Juvenile bud 2	0.010
	CRR073305	Juvenile bud 3	0.624
	CRR073306	Third green 1	0.387
	CRR073307	Third green 2	0.518
	CRR073308	Third green 3	0.131
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.031
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.100