Gene detail

Detail information of GWHGAAZE028237

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011094888.1	3.5228E-158	PREDICTED: laccase-17-like [Sesamum indicum]
COG	YP_007590081.1	3E-11	putative multicopper oxidase
Swissprot	tr\|Q9FJD5\|LAC17_ARATH	2E-148	Laccase-17 (Precursor)
trEMBL	tr\|A0A022QG95\|A0A022QG95_ERYGU	2E-155	Laccase {ECO:0000256\|RuleBase:RU361119}
TAIR10	AT5G60020.1	2E-123	laccase 17

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	47973415	47976017	+
GWHAAZE00000008	mRNA	47973415	47976017	+
GWHAAZE00000008	exon	47973415	47973531	+
GWHAAZE00000008	exon	47973648	47973739	+
GWHAAZE00000008	exon	47973881	47974125	+
GWHAAZE00000008	exon	47974217	47974345	+
GWHAAZE00000008	exon	47974441	47974766	+
GWHAAZE00000008	exon	47974924	47974974	+
GWHAAZE00000008	exon	47975205	47975371	+
GWHAAZE00000008	exon	47975801	47976017	+
GWHAAZE00000008	CDS	47973415	47973531	+
GWHAAZE00000008	CDS	47973648	47973739	+
GWHAAZE00000008	CDS	47973881	47974125	+
GWHAAZE00000008	CDS	47974217	47974345	+
GWHAAZE00000008	CDS	47974441	47974766	+
GWHAAZE00000008	CDS	47974924	47974974	+
GWHAAZE00000008	CDS	47975205	47975371	+
GWHAAZE00000008	CDS	47975801	47976017	+

Transcript Sequence
>GWHTAAZE028271 ATGGGTGCTTCTGTTCTTCCATCAATGGCTTTAATAGGAGCTCTCTTCTCATTGTTAACATTTTGTTTGATTCCTCAGCCTGCACTTGCTGGGGTCACCAGGAACTACGAGTTTAATATCAAATTGCAAAATGTGGCGGCTATGTCATCTGAAGAGCATGGTTACCGTCAATGGGCAGTTTCCGGGTCCTCGCATTGTAGCCCGCGAGGGCATGGAATTAGACAGCTTAGAAGTGGGTGGGCTGATGGTCCAGCATATGTAACGCAGTGCCCTATTCAAACTGGACAGAGTTATGTGTATAACTACACCATTGTTGGCCAAAGAGGAACTCTCTTTTGGCACGCTCATATTTCATGGCTAAGATCTACTCTCTATGGTCCTCTAATCATCCTCCCCAAGATTAATGTGCCTTATCCATTTATCAAACCTCACAAGGAAGTTCCCATCATCTTTGGAGAGTGGTTCAATGCTGACACTGAGGCTATAATCAACCAAGCCTTACAAACTGGTGGAGGTCCAAATGTCTCTGATGCCTATACCATCAATGGACTTCCTGGGCCTTTATACAACTGCTCCGCAAAAGATTCGTTCAAGTTAAAGGTTAAGCCTGGAAAGACTTACCTTCTTCGATTCATTAATGCTGCCCTCAACGACGAGCTCTTCTTCAGTATTGCAAACCACAGCGTCACAGTAGTAGAAGCAGACGCCATTTACGTAAAACCATTTGAAACCGACACCATACTAATCACACCTGGACAAACAACTAATGTTCTTCTCAAAACCAAACCCGAATTCCCAGACGCCACTTTCCTCATGATGGCTAGACCATACGCGACCGGCCAAGGCACATTTGACAACTCAACTGTGGCCGCTATTCTTGAATACAAATCCCCAATTTCTCATTCTACAGGCTTGGCACAAGCCCTTGTGAGAAGAACAATACCTGCCAAGGACCCAACGGACACTAGCATTCTTGGTGCTGAGAGTCACCCCCTTCATCTCCACGGCTTCAATTTCTTTGTCGTTGGTCAAGGATTTGGAAACTATGATGCTAATAAGGATCCTAAAAAATTCAATCTTGTTGACCCGATTGAAAGGAACACAGTTGGTGTGCCCTCCGTGGGTGGGGTATGGTTCATGCATTGCCATCTGGAAGTACACACAAGCTGGGGTTTGAAAATGGCATGGCTTGTCTTAGATGGAAAGCTTCCCAATCAAAGCTCCTTCCTCCACCCTCCGATCTCCCCAAATGTTGATCCATCTTATTCTTTTACAAGACCTCTTTTTTTCCCTTTTTTTGAGTTATTGGCCTTGTGTGAATTTACGATTATTATTATGAGTTAA

Network for GWHGAAZE028237

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0249

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07732.16	Cu-oxidase_3	71	133	8.60E-19
PF00394.23	Cu-oxidase	146	296	2.10E-42
PF07731.15	Cu-oxidase_2	320	400	1.60E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005507	molecular_function	copper ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.874
	SRR3591706	second leaf	1.398
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.479
	SRR3591709	Stem	1.951
	SRR3591710	White floral bud	1.689
	SRR3591711	White flower	0.417
	SRR3591712	Green floral bud	4.467
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.396
	SRR8316896	Juvenile bud stage	0.549
	SRR8316897	Juvenile bud stage	0.117
	SRR8316894	Third green stage	0.446
	SRR8316900	Third green stage	2.802
	SRR8316901	Third green stage	3.971
	SRR8316898	Complete white stage	0.087
	SRR8316899	Complete white stage	0.551
	SRR8316903	Complete white stage	0.084
	SRR8316902	Silver flowering stage	0.074
	SRR8316904	Silver flowering stage	0.046
	SRR8316905	Silver flowering stage	0.019
	SRR8316906	Gold flowering stage	0.018
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	3.703
	SRR6706287	Light intensity 50%	2.699
	SRR6706288	Light intensity 20%	3.191
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.471
	CNS0095593	Slightly white alabastrum(diploid) 2	0.429
	CNS0095594	Slightly white alabastrum(diploid) 3	0.372
	CNS0095595	Whole white alabastrum(diploid) 2	0.674
	CNS0095596	Whole white alabastrum(diploid) 3	0.553
	CNS0095597	Whole white alabastrum(diploid) 4	0.344
	CNS0095598	Silvery flower (diploied) 1	0.017
	CNS0095599	Silvery flower (diploied) 2	0.097
	CNS0095600	Silvery flower (diploied) 3	0.115
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.225
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.106
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.327
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.014
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.029
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.120
	CNS0095610	Silvery flower (tetraploid) 1	0.024
	CNS0095611	Silvery flower (tetraploid) 2	0.023
	CNS0095612	Silvery flower (tetraploid) 3	0.007
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.663
	CRR073298	Stem 2	0.464
	CRR073299	Stem 3	0.952
	CRR073300	Leaf 1	2.628
	CRR073301	Leaf 2	1.595
	CRR073302	Leaf 3	4.450
	CRR073303	Juvenile bud 1	0.290
	CRR073304	Juvenile bud 2	0.146
	CRR073305	Juvenile bud 3	0.679
	CRR073306	Third green 1	0.167
	CRR073307	Third green 2	0.275
	CRR073308	Third green 3	0.214
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.071
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.048
	CRR073318	Tawny withering 1	0.021
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.043