Gene detail

Detail information of GWHGAAZE028240

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN80346.1	3.1869E-171	hypothetical protein VITISV_003134 [Vitis vinifera]
COG	YP_007590081.1	4E-18	putative multicopper oxidase
Swissprot	tr\|Q9FJD5\|LAC17_ARATH	7E-156	Laccase-17 (Precursor)
trEMBL	tr\|A5ARD9\|A5ARD9_VITVI	1E-171	Laccase {ECO:0000256\|RuleBase:RU361119}
TAIR10	AT5G60020.1	1E-122	laccase 17

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	48004166	48005694	-
GWHAAZE00000008	mRNA	48004166	48005694	-
GWHAAZE00000008	exon	48005531	48005694	-
GWHAAZE00000008	exon	48005313	48005399	-
GWHAAZE00000008	exon	48004985	48005229	-
GWHAAZE00000008	exon	48004765	48004893	-
GWHAAZE00000008	exon	48004541	48004669	-
GWHAAZE00000008	exon	48004166	48004455	-
GWHAAZE00000008	CDS	48005531	48005694	-
GWHAAZE00000008	CDS	48005313	48005399	-
GWHAAZE00000008	CDS	48004985	48005229	-
GWHAAZE00000008	CDS	48004765	48004893	-
GWHAAZE00000008	CDS	48004541	48004669	-
GWHAAZE00000008	CDS	48004166	48004455	-

Transcript Sequence
>GWHTAAZE028274 ATGGGTGCTTCTGTTCTTCCATCAATGGCTTTAATAGGAGCTCTCTTCTCATTGTTAACATTTTGTTTGATTCCTCAGCCTGCACTTGCTGGGGTCACCAGGAACTACGAGTTTAATGTACGTGTTTCATATATAGGCCATTTTTGGTCGCTTGAAAAAAGTTGTTTCGGTCCTCGCATTGTAGCCAGCGAGGGTGACCGTCTACAAATAAAAGTCACTAACCATGTCTCAAACAACATTTCCATCCACTGGCATGGAATTAGACAGCTTAGAAGTGGGTGGGCTGATGGTCCAGCATATGTAACGCAGTGCCCTATTCAAACTGGACAGAGTTATGTGTATAACTACACCATTGTTGGCCAAAGAGGAACTCTCTTTTGGCACGCTCATATTTCATGGCTAAGATCTACTCTCTATGGTCCTCTAATCATCCTCCCCAAGATTAATGTGCCTTATCCATTTATCAAACCTCACAAGGAAGTTCCCATCATCTTTGGAGAGTGGTTCAATGCTGACACTGAGGCTATAATCAACCAAGCCTTACAAACTGGTGGAGGTCCAAATGTCTCTGATGCCTATACCATCAATGGACTTCCTGGGCCTTTATACAACTGCTCCGCAAAAGATTCGTTCAAGTTAAAGGTTAAGCCTGGAAAGACTTACCTTCTTCGATTCATTAATGCTGCCCTCAACGACGAGCTCTTCTTCAGTATTGCAAACCACATCCACAAGAGTAGAAGCAGGCGCCATTTACACGCCACTTTCCTCATGATGGCTAGACCATACGCGACCGGCCAAGGCACATTTGACAACTCAACTGTGGCCGCTATTCTTGAATACAAATCCCCAATTTCTCATTCTACAGTCTCAATTAAAAAACTCCCACTCTTAAAACCAACATTACCTCCTCTAAACGACACTTCTTTTGCTACAAAATTTAGCAAAAAATTGCGCAGCTTAGCTAGTGCTCAATTCCCTGCTAATGTACCACAAAAGTTGACAAGAAATTTTTGTTTACAGAGGGCTTGGCACAAGCCCTTGTGA

Network for GWHGAAZE028240

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0249

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07732.16	Cu-oxidase_3	47	147	8.90E-35
PF00394.23	Cu-oxidase	160	241	3.70E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005507	molecular_function	copper ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.251
	SRR3591706	second leaf	0.580
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.095
	SRR3591709	Stem	0.754
	SRR3591710	White floral bud	0.982
	SRR3591711	White flower	0.140
	SRR3591712	Green floral bud	2.783
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.339
	SRR8316896	Juvenile bud stage	0.255
	SRR8316897	Juvenile bud stage	0.032
	SRR8316894	Third green stage	0.272
	SRR8316900	Third green stage	0.578
	SRR8316901	Third green stage	1.621
	SRR8316898	Complete white stage	0.020
	SRR8316899	Complete white stage	0.193
	SRR8316903	Complete white stage	0.082
	SRR8316902	Silver flowering stage	0.011
	SRR8316904	Silver flowering stage	0.162
	SRR8316905	Silver flowering stage	0.011
	SRR8316906	Gold flowering stage	0.014
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.772
	SRR6706287	Light intensity 50%	0.221
	SRR6706288	Light intensity 20%	0.364
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.044
	CNS0095593	Slightly white alabastrum(diploid) 2	0.261
	CNS0095594	Slightly white alabastrum(diploid) 3	0.031
	CNS0095595	Whole white alabastrum(diploid) 2	0.111
	CNS0095596	Whole white alabastrum(diploid) 3	0.087
	CNS0095597	Whole white alabastrum(diploid) 4	0.156
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.016
	CNS0095600	Silvery flower (diploied) 3	0.160
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.083
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.085
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.698
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.015
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.146
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.682
	CRR073298	Stem 2	0.220
	CRR073299	Stem 3	0.907
	CRR073300	Leaf 1	0.707
	CRR073301	Leaf 2	1.026
	CRR073302	Leaf 3	1.225
	CRR073303	Juvenile bud 1	0.042
	CRR073304	Juvenile bud 2	0.408
	CRR073305	Juvenile bud 3	0.179
	CRR073306	Third green 1	0.114
	CRR073307	Third green 2	0.058
	CRR073308	Third green 3	0.106
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.008
	CRR073318	Tawny withering 1	0.032
	CRR073319	Tawny withering 2	0.002
	CRR073320	Tawny withering 3	0.003