Gene detail

Detail information of GWHGAAZE028260

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP34051.1	6.0149E-117	hypothetical protein JCGZ_07622 [Jatropha curcas]
Swissprot	tr\|Q5XEM9\|ALFL5_ARATH	1E-100	PHD finger protein ALFIN-LIKE 5, N-terminally processed
trEMBL	tr\|A0A067KCV1\|A0A067KCV1_JATCU	2E-117	Uncharacterized protein {ECO:0000313\|EMBL:KDP34051.1}
TAIR10	AT5G20510.1	2E-69	alfin-like 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	48972917	48976404	-
GWHAAZE00000008	mRNA	48972917	48976404	-
GWHAAZE00000008	exon	48972917	48973192	-
GWHAAZE00000008	exon	48973802	48973934	-
GWHAAZE00000008	exon	48976160	48976404	-
GWHAAZE00000008	CDS	48976160	48976404	-
GWHAAZE00000008	CDS	48973802	48973934	-
GWHAAZE00000008	CDS	48972917	48973192	-

Transcript Sequence
>GWHTAAZE028294 ATGTTTAATTTTACAGATAAGGAAAATCTTTGCCTCTATGGATTTCCCAATGAGCAGTGGGAAGTGAATTTACCAGCTGAAGAGGTGCCTCCAGAGCTTCCGGAGCCTGCACTGGGCATTAACTTTGCCAGAGACGGAATGCAAGAAAAGGACTGGTTATCTTTGGTTGCTGTCCACAGTGATGCTTGGTTACTTGCTGTTGCCTTCTATTTTGGTGCTAGATTTGGATTTGATAGAGCTGATAGAAAACGGCTTTTTAACATGATAAATGATCTCCCAACAATATTTGAGGTTGTGACTGGGGCTGCGAAGAAGCAGACCAAGGAGAAGTCATCGGTCTCAAATCACAGCAGCAGCAAATCTAAGTCAAACTCTAAGCGGGGCACAGAATCTCAGCCCAAGTATCCGAAAGGGGCACCACCACCAAAAGACGAGGAAGAAGAGGGTGTAGAAGAAGAGGAAGAGGAGGATGAACACGGGGATGCACTTTGTGGTGCATGCGGAGAAAACTACGCCTCTGATGAGTTCTGGATCTGCTGTGATATCTGTGAGAAGTGGTTCCATGGAAAGTGTGTCAAGATAACCCCAGCAAGGGCCGAGCATATTAAGCAGTACAAATGCCCTTCTTGTAGCAACAAGAGAGCACGTCCTTGA

Network for GWHGAAZE028260

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12165.9	Alfin	6	101	9.10E-51
PF00628.30	PHD	164	212	1.40E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Alfin-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0042393	molecular_function	histone binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.849
	SRR3591706	second leaf	41.440
	SRR3591707	mature leaf	23.577
	SRR3591708	Shoot apex	96.018
	SRR3591709	Stem	46.585
	SRR3591710	White floral bud	23.527
	SRR3591711	White flower	21.465
	SRR3591712	Green floral bud	26.178
	SRR3591713	Yellow flower	13.976
SRP173429	SRR8316895	Juvenile bud stage	14.103
	SRR8316896	Juvenile bud stage	13.359
	SRR8316897	Juvenile bud stage	12.821
	SRR8316894	Third green stage	3.995
	SRR8316900	Third green stage	9.764
	SRR8316901	Third green stage	11.934
	SRR8316898	Complete white stage	3.789
	SRR8316899	Complete white stage	14.837
	SRR8316903	Complete white stage	6.483
	SRR8316902	Silver flowering stage	3.781
	SRR8316904	Silver flowering stage	3.562
	SRR8316905	Silver flowering stage	1.710
	SRR8316906	Gold flowering stage	6.940
	SRR8316907	Gold flowering stage	5.719
	SRR8316908	Gold flowering stage	8.479
SRP132670	SRR6706286	Control	14.547
	SRR6706287	Light intensity 50%	13.215
	SRR6706288	Light intensity 20%	13.501
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.760
	CNS0095593	Slightly white alabastrum(diploid) 2	13.512
	CNS0095594	Slightly white alabastrum(diploid) 3	14.664
	CNS0095595	Whole white alabastrum(diploid) 2	9.705
	CNS0095596	Whole white alabastrum(diploid) 3	8.097
	CNS0095597	Whole white alabastrum(diploid) 4	7.496
	CNS0095598	Silvery flower (diploied) 1	16.940
	CNS0095599	Silvery flower (diploied) 2	10.919
	CNS0095600	Silvery flower (diploied) 3	8.144
	CNS0095601	Golden flower (diploid) 1	13.599
	CNS0095602	Golden flower (diploid) 2	8.615
	CNS0095603	Golden flower (diploid) 3	9.611
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.268
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.565
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.069
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.984
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.358
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.800
	CNS0095610	Silvery flower (tetraploid) 1	11.367
	CNS0095611	Silvery flower (tetraploid) 2	11.641
	CNS0095612	Silvery flower (tetraploid) 3	8.964
	CNS0095613	Golden flower (tetraploid) 1	10.598
	CNS0095614	Golden flower (tetraploid) 2	11.156
	CNS0095615	Golden flower (tetraploid) 3	10.475
CRA001975	CRR073297	Stem 1	12.461
	CRR073298	Stem 2	13.571
	CRR073299	Stem 3	16.467
	CRR073300	Leaf 1	13.828
	CRR073301	Leaf 2	11.461
	CRR073302	Leaf 3	10.543
	CRR073303	Juvenile bud 1	10.810
	CRR073304	Juvenile bud 2	8.841
	CRR073305	Juvenile bud 3	9.725
	CRR073306	Third green 1	5.131
	CRR073307	Third green 2	4.229
	CRR073308	Third green 3	3.156
	CRR073309	Second white 1	3.658
	CRR073310	Second white 2	3.327
	CRR073311	Second white 3	3.259
	CRR073312	Silver flowering 1	2.161
	CRR073313	Silver flowering 2	3.001
	CRR073314	Silver flowering 3	1.794
	CRR073315	Gold flowering 1	6.774
	CRR073316	Gold flowering 2	6.213
	CRR073317	Gold flowering 3	6.243
	CRR073318	Tawny withering 1	13.720
	CRR073319	Tawny withering 2	11.076
	CRR073320	Tawny withering 3	12.943