Detail information of GWHGAAZE028275


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrACJ63311.19.01727E-93RNA polymerase III large subunit [Papaver orientale]
COGYP_001737951.16E-17DNA-directed RNA polymerase subunit A
Swissprottr|P18616|NRPB1_ARATH2E-10DNA-directed RNA polymerase II subunit 1
trEMBLtr|E3P6R3|E3P6R3_PAPOR3E-93DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279} (Fragment)
TAIR10AT5G60040.29E-74nuclear RNA polymerase C1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene4947635149478645+
GWHAAZE00000008mRNA4947635149478645+
GWHAAZE00000008exon4947635149476539+
GWHAAZE00000008exon4947782949478070+
GWHAAZE00000008exon4947846849478645+
GWHAAZE00000008CDS4947635149476539+
GWHAAZE00000008CDS4947782949478070+
GWHAAZE00000008CDS4947846849478645+
Transcript Sequence

Network for GWHGAAZE028275

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04983.19RNA_pol_Rpb1_341808.70E-25
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K03018RPC1, POLR3A RNA polymerase map03020
Cytosolic DNA-sensing pathwaymap04623

Gene Ontology

GO term OntologyName
GO:0006351biological_processtranscription, DNA-templated
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.955
SRR3591706second leaf3.133
SRR3591707mature leaf3.568
SRR3591708Shoot apex5.859
SRR3591709Stem5.408
SRR3591710White floral bud5.925
SRR3591711White flower6.768
SRR3591712Green floral bud7.515
SRR3591713Yellow flower3.985
SRP173429 SRR8316895Juvenile bud stage 3.840
SRR8316896Juvenile bud stage 4.613
SRR8316897Juvenile bud stage 1.510
SRR8316894Third green stage 3.304
SRR8316900Third green stage 5.261
SRR8316901Third green stage 4.040
SRR8316898Complete white stage 1.372
SRR8316899Complete white stage 5.026
SRR8316903Complete white stage 3.422
SRR8316902Silver flowering stage1.843
SRR8316904Silver flowering stage2.636
SRR8316905Silver flowering stage0.586
SRR8316906Gold flowering stage 3.235
SRR8316907Gold flowering stage 2.607
SRR8316908Gold flowering stage 3.332
SRP132670SRR6706286Control3.523
SRR6706287Light intensity 50%4.806
SRR6706288Light intensity 20%5.489
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.212
CNS0095593Slightly white alabastrum(diploid) 22.481
CNS0095594Slightly white alabastrum(diploid) 31.498
CNS0095595Whole white alabastrum(diploid) 21.890
CNS0095596Whole white alabastrum(diploid) 31.191
CNS0095597Whole white alabastrum(diploid) 41.819
CNS0095598Silvery flower (diploied) 12.070
CNS0095599Silvery flower (diploied) 22.974
CNS0095600Silvery flower (diploied) 33.412
CNS0095601Golden flower (diploid) 10.998
CNS0095602Golden flower (diploid) 24.205
CNS0095603Golden flower (diploid) 34.510
CNS0095604Slightly white alabastrum(tetraploid) 11.677
CNS0095605Slightly white alabastrum(tetraploid) 20.390
CNS0095606Slightly white alabastrum(tetraploid) 37.950
CNS0095607Whole white alabastrum(tetraploid) 10.843
CNS0095608Whole white alabastrum(tetraploid) 21.149
CNS0095609Whole white alabastrum(tetraploid) 37.613
CNS0095610Silvery flower (tetraploid) 17.209
CNS0095611Silvery flower (tetraploid) 25.501
CNS0095612Silvery flower (tetraploid) 32.557
CNS0095613Golden flower (tetraploid) 10.815
CNS0095614Golden flower (tetraploid) 23.618
CNS0095615Golden flower (tetraploid) 32.317
CRA001975CRR073297Stem 14.745
CRR073298Stem 24.782
CRR073299Stem 33.808
CRR073300Leaf 15.708
CRR073301Leaf 22.970
CRR073302Leaf 32.656
CRR073303Juvenile bud 13.782
CRR073304Juvenile bud 21.496
CRR073305Juvenile bud 33.352
CRR073306Third green 10.135
CRR073307Third green 20.219
CRR073308Third green 30.965
CRR073309Second white 10.536
CRR073310Second white 21.612
CRR073311Second white 31.779
CRR073312Silver flowering 10.224
CRR073313Silver flowering 20.780
CRR073314Silver flowering 30.885
CRR073315Gold flowering 11.349
CRR073316Gold flowering 22.823
CRR073317Gold flowering 31.091
CRR073318Tawny withering 11.467
CRR073319Tawny withering 21.824
CRR073320Tawny withering 32.783